Shigella flexneri 8401 (serotype 5b): SFV_3913
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Entry
SFV_3913 CDS
T00377
Symbol
yibD
Name
(GenBank) putative regulator
KO
K19354
heptose III glucuronosyltransferase [EC:2.4.1.-]
Organism
sfv
Shigella flexneri 8401 (serotype 5b)
Pathway
sfv00540
Lipopolysaccharide biosynthesis
Brite
KEGG Orthology (KO) [BR:
sfv00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00540 Lipopolysaccharide biosynthesis
SFV_3913 (yibD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
sfv01005
]
SFV_3913 (yibD)
Lipopolysaccharide biosynthesis proteins [BR:
sfv01005
]
Core region
SFV_3913 (yibD)
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Gene cluster
GFIT
Motif
Pfam:
Glycos_transf_2
Glyco_tranf_2_2
Glyco_tranf_2_3
Glyco_tranf_2_4
Motif
Other DBs
NCBI-ProteinID:
ABF05921
UniProt:
Q0SYE4
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All DBs
Position
4015797..4016636
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AA seq
279 aa
AA seq
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MNSTNKLSVIIPLYNAGDDFRTCMESLITQTWTALEIIIINDGSTDNSVEIAKHYAENYP
HVRLLHQANAGASVARNRGIEVATGKYVAFVDADDEVYPTMYETLMTMALEDDLDVAQCN
ADWSFRETGETWQSIPSDRLRSTGVLTGPDWLRMGLSSRRWTHVVWMGVYRRDVIVKNNI
KFIAGLHHQDIVWTTEFMFNALRARYTEQSLYKYYLHNTSVSRLHRQGNKNLNYQRHYIK
ITRLLEKLNRNYADKITIYPEFHQQITYEALRVCHAVRR
NT seq
840 nt
NT seq
+upstream
nt +downstream
nt
atgaacagcaccaataaacttagtgttattattccgttatataatgcgggcgatgatttc
cgcacttgtatggaatctttaattacgcaaacctggactgctctggaaatcattattatt
aacgatggttcaacggataattctgttgaaatagcaaagcattacgcagaaaactatccg
cacgttcgtttgttgcatcaggcgaatgctggcgcatcggtagcgcgtaatcgtgggatc
gaggtggcgacgggcaaatatgtcgcttttgtcgatgctgacgatgaggtctatcccacc
atgtacgaaacgctgatgaccatggcgttagaggacgacctcgacgtggcgcagtgcaac
gctgactggtcttttcgtgaaacgggagaaacctggcaatccatccccagcgatcgcctt
cgctcaaccggtgtattaaccggcccggactggctgcggatggggctttcttcgcgccgt
tggactcacgttgtctggatgggggtttatcgccgtgatgttattgttaaaaataacatt
aaatttattgccggattacatcatcaggatattgtctggacaacagaattcatgtttaac
gcgctgcgtgcgcgatataccgagcaatcattatataaatattatctgcataatacgtca
gtgagtcggttgcatagacaagggaataaaaaccttaattatcaacgtcactatattaag
attacccgcctgctggagaaattaaatcgaaattatgccgacaaaattacgatttatccg
gaatttcatcagcaaataacttacgaagcattgcgtgtttgccatgcggtgcgcaggtaa
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