KEGG   Shigella flexneri 8401 (serotype 5b): SFV_4330
Entry
SFV_4330          CDS       T00377                                 
Symbol
hfq
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
sfv  Shigella flexneri 8401 (serotype 5b)
Pathway
sfv02024  Quorum sensing
sfv03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sfv00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SFV_4330 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    SFV_4330 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sfv03019]
    SFV_4330 (hfq)
   03036 Chromosome and associated proteins [BR:sfv03036]
    SFV_4330 (hfq)
Messenger RNA biogenesis [BR:sfv03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     SFV_4330 (hfq)
Chromosome and associated proteins [BR:sfv03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    SFV_4330 (hfq)
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: ABF06305
UniProt: Q0SXB0
LinkDB
Position
4472960..4473268
AA seq 102 aa
MAKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAIS
TVVPSRPVSHHSNNAGGGTSSNYHHGSSAQNTSAQQDSEETE
NT seq 309 nt   +upstreamnt  +downstreamnt
atggctaaggggcaatctttacaagatccgttcctgaacgcactgcgtcgggaacgtgtt
ccagtttctatttatttggtgaatggtattaagctgcaagggcaaatcgagtcttttgat
cagttcgtgatcctgttgaaaaacacggtcagccagatggtttacaagcacgcgatttct
actgttgtcccatctcgcccggtttctcatcacagtaacaacgccggtggcggtaccagc
agtaactaccatcatggtagcagcgcgcagaatacttccgcgcaacaggacagcgaagaa
accgaataa

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