Shigella flexneri 8401 (serotype 5b): SFV_4406
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Entry
SFV_4406 CDS
T00377
Symbol
holD
Name
(GenBank) DNA polymerase III, psi subunit
KO
K02344
DNA polymerase III subunit psi [EC:
2.7.7.7
]
Organism
sfv
Shigella flexneri 8401 (serotype 5b)
Pathway
sfv03030
DNA replication
sfv03430
Mismatch repair
sfv03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sfv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SFV_4406 (holD)
03430 Mismatch repair
SFV_4406 (holD)
03440 Homologous recombination
SFV_4406 (holD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sfv03032
]
SFV_4406 (holD)
03400 DNA repair and recombination proteins [BR:
sfv03400
]
SFV_4406 (holD)
Enzymes [BR:
sfv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SFV_4406 (holD)
DNA replication proteins [BR:
sfv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SFV_4406 (holD)
DNA repair and recombination proteins [BR:
sfv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SFV_4406 (holD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_III_psi
CSTF_C
DUF8628
Motif
Other DBs
NCBI-ProteinID:
ABF06376
UniProt:
Q0SX39
LinkDB
All DBs
Position
4541746..4542159
Genome browser
AA seq
137 aa
AA seq
DB search
MTSRRDWQLQQLGITQWSLRRPGALQGEIAIASPAHVRLVMVANDLPALTDPLVSDVLRA
LTVSPDQVLQLTPEKIAMLPQGSRCNSWRLGTDEPLSLEGAQVASPALTELRANPTARAA
LWQQICTYEHDFFPRND
NT seq
414 nt
NT seq
+upstream
nt +downstream
nt
atgacatcccgacgagactggcagttacagcaactgggcattacccagtggtcgctgcgt
cgccctggcgcgttgcagggggagattgccattgcgagcccggcacacgtccgtctggtg
atggtggcaaacgatcttcccgccctgactgatcctttagtgagcgatgttctgcgcgca
ttaaccgtcagccccgatcaagtgctgcaactgacgccagaaaaaatcgcgatgctgccg
caaggcagtcgctgcaacagctggcggttgggtactgacgaaccgctatcattggaaggc
gctcaggtggcatcaccggcgctcaccgaattacgggcaaacccaacggcacgcgccgcg
ttatggcaacaaatttgcacatatgaacacgatttcttccctcgaaacgactga
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