Serratia fonticola DSM 4576: WN53_09390
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Entry
WN53_09390 CDS
T04030
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sfw
Serratia fonticola DSM 4576
Pathway
sfw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WN53_09390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfw03019
]
WN53_09390
03400 DNA repair and recombination proteins [BR:
sfw03400
]
WN53_09390
Enzymes [BR:
sfw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
WN53_09390
Messenger RNA biogenesis [BR:
sfw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
WN53_09390
DNA repair and recombination proteins [BR:
sfw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
WN53_09390
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
AKG69304
UniProt:
A0A0F7HAS3
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All DBs
Position
2120300..2122132
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AA seq
610 aa
AA seq
DB search
MSTAAVINRELLAEQVLRDTFGYQQFRPGQQTIINAIIGGQDCLVVMPTGGGKSLCYQIP
ALVMDGLTLVVSPLISLMKDQVDQLLAYGVSAACYNSTQTREQQLEVMAGCRSGQIKMLY
IAPERLMMDSFLELLDHCPPVMLAVDEAHCISQWGHDFRPEYRALGQLKQRFPTMPVVAL
TATADEATRGDIVRLLALDEPLIQISSFDRPNIRYTLVEKFKPLDQLWRFVQDQRGKSGI
IYCNSRAKVEDTTARLQSRGLSVGAYHAGLDNERRSQVQEAFQRDDLQVVVATVAFGMGI
NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAILLYDPADMAWLRRCLEEKPAGQQ
LDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGKQQACGNCDICLDPPKRYDGLEDARKAL
SAIGRVGQRFGIGYVVEVLRGSNNQRIREFGHEKLPVYGIGRDQTTEHWTSVLRQLIHLG
FITQNIAMHSALQLTEAARPVLRGEVVLQLAVPRIQSFKVRSSANQKSYGGNYDRKLFAK
LRKLRKSIADEENIPPYVVFNDATLLEMAEQMPIRASELLSVNGVGQRKLERFGAPFMAM
IRAHLDGDDE
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
gtgtcaaccgcagcagtgataaacagagagttgctggcagagcaggtattacgcgatacc
ttcggctaccagcagttccgtccgggtcaacaaacgattatcaacgcaattatcggcggc
caggattgcctggtggtgatgccgaccggcgggggtaaatcgctgtgctatcaaatcccg
gcgctggtgatggatggactgacgctggtggtatccccactgatttccttgatgaaagat
caggtcgatcagctcttggcctatggcgtttccgccgcctgctataactcgacgcaaacg
cgcgagcagcagttggaggtgatggcgggctgtcgcagcggccagatcaagatgctgtat
atcgcccccgaacggctgatgatggacagcttcctcgaactgttggatcactgtccgccg
gtgatgctggcggtggatgaggcacactgtatttcccagtggggccacgatttccgcccg
gaataccgcgccctgggccagttgaagcaacgtttcccgaccatgccggtagtggcattg
acggccaccgctgatgaagccacgcggggggatatcgttcgcctgttggcgctagacgag
ccgctgatccagatcagcagcttcgaccgccccaatatccgctacacgctggtggagaag
tttaagccgctcgaccaactttggcgcttcgtgcaggatcagcgcggcaaaagcggcatt
atttactgcaacagccgcgccaaggtcgaagacaccaccgcacgtctgcaaagccgtggg
ctgagcgttggggcttatcacgccggactggataacgaacgccgctctcaggtgcaggag
gctttccagcgtgatgatttgcaagtggtggtagctaccgtggccttcggcatgggcatc
aacaaacccaacgtgcgttttgtggtgcacttcgatattccgcgcaacatagagtcctat
tatcaggagactggccgagcagggcgtgatggcctgccagcggaagcgatcttgctctat
gacccggctgatatggcctggttacgccgctgcctggaagagaaaccggcggggcagcag
ttggatatcgaacgccataagctcaacgccatgggggcatttgccgaagcgcaaacctgc
cgccgcctggtgctgctgaactacttcggtgaaggtaagcagcaggcctgtggcaactgc
gatatctgccttgacccgcccaagcgttatgacggcctggaggatgcccgcaaggcactg
tcggcgattggccgcgttgggcaacgtttcggcattggctatgtggtggaggtgctgcgc
ggctccaataaccagcgtatccgcgagtttggtcatgaaaagctgccggtgtacggcatt
ggccgcgatcagaccaccgaacactggaccagcgtgctgcgccaactgatccatctgggc
tttatcacccagaacatagcgatgcattcggcattgcaactgactgaagccgcgcgcccg
gtgctgcgtggtgaagtagtgttacagctggcggtgccgcgtattcagagcttcaaggta
cgtagcagcgccaaccagaaatcctacggcggcaattacgatcgcaagctgtttgccaaa
ctgcgcaagctgcgtaaatcgattgccgacgaagagaacatcccaccgtacgtggtgttc
aacgacgcaaccctgctggagatggccgaacagatgccgatcagagccagcgagttgttg
agcgtcaacggggtggggcagcgtaagctggaacgttttggtgcgccatttatggcgatg
atccgcgctcacctcgacggtgacgacgaataa
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