Serratia fonticola DSM 4576: WN53_09900
Help
Entry
WN53_09900 CDS
T04030
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
sfw
Serratia fonticola DSM 4576
Pathway
sfw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sfw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
WN53_09900 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sfw03021
]
WN53_09900 (rpoB)
03400 DNA repair and recombination proteins [BR:
sfw03400
]
WN53_09900 (rpoB)
Enzymes [BR:
sfw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
WN53_09900 (rpoB)
Transcription machinery [BR:
sfw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
WN53_09900 (rpoB)
DNA repair and recombination proteins [BR:
sfw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
WN53_09900 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
AKG69394
UniProt:
A0A0F7HB84
LinkDB
All DBs
Position
2227770..2231798
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ
SYSGNSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALSYTTEQILDLFFEKVVFEIRDNKLQME
LVPERLRGETASFDIEANGKIYVEKARRITARHIRQLEKDEIRSIEVPVEYIAGKVVAKD
YIDTNTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGAYISETVRVDPTSDRL
SALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRDEIEGSGIL
SKDDIIEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVRDGVVT
DEINYLSAIEEGNFVIAQANSNLDEEGRFEEDLVTCRSKGESSLFSRDQVDYMDVSTQQV
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR
GGVIQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVNLGEPIERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVDKDKRALEIEEMQLKQAKKDL
TEELQILEAGLFARIHAVLVSGGIEAEKLSKLPRDRWLELGLTDEDKQNQLEQLAEQYDE
LKSDFEKKLDAKRRKITQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKIN
PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGEKINQMLKQHQEVAK
LREFIQKAYDLGDGVCQKVDLNTFTDDEVLRLAENLKKGMPIATPVFDGAKESEIKQLLE
MGGIPTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPGMP
ESFNVLLKEIRSLGINIELEGD
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgagaagaaacgtattcgtaaggattttggtaagcgtccgcaa
gttttggacataccttatctcctttctatccagcttgactcgttccagaaatttatcgag
caagacccagaagggcaatacggcttagaagccgcattccgttctgttttcccgatccag
agctacagtggcaattcggagctgcaatacgttagctaccgtcttggtgagccggtgttt
gacgttaaagagtgccagatccgtggtgtgacgtactctgcaccgctgcgcgtaaaactg
cgcctggtcatctacgaacgtgaagcaccagaaggtacggtcaaagacatcaaggaacaa
gaagtctatatgggcgagattccgctcatgaccgaaaacggtacctttgtcattaacggt
actgagagggttatcgtatcccagctgcatcgtagtcctggtgtgttcttcgacagcgat
aagggcaaaacccactcctcgggtaaagtgctgtataacgcacgtatcatcccttaccgt
ggctcatggctggatttcgagtttgacccgaaagacaacctgttcgtgcgtatcgaccgt
cgccgtaaactgcctgcgaccattattctgcgcgcgctgagctacaccactgagcagatc
cttgacctgttctttgagaaagttgttttcgagatccgtgataacaagctgcagatggag
ctggttccagagcgtctgcgtggtgaaactgcgtccttcgatatcgaagccaacggtaag
atctacgttgagaaagcacgccgtatcaccgctcgtcatatccgtcagctcgaaaaagac
gaaattcgcagtattgaagtaccggttgagtacatcgcgggcaaagtggtcgcgaaggac
tatatcgataccaataccggcgaactgatctgtgcagccaacatggagctgtcactggat
ctgttggccaagctgagccagtcaggccacaagcgtatcgaaacgctgttcaccaacgat
ctggaccacggtgcgtacatctctgaaaccgtacgtgtcgacccaaccagcgatcgtctg
agcgctctggtagaaatctaccgcatgatgcgccctggtgagccaccaacgcgtgaagcc
gcggaaagcctgtttgagaacctgttcttctctgaagaccgctacgatctgtctgcggtt
ggccggatgaagttcaaccgttctctgctgcgtgacgagatcgaaggttcgggcatcctg
agcaaagacgacatcatcgaagtgatgaagaagctcatcgatatccgtaacggtaaaggc
gaagtggacgatatcgaccacttgggcaaccgtcgtatccgttccgttggcgaaatggcc
gagaaccagttccgtgtcggtctggtacgtgttgagcgtgcggtgaaagaacgtctgtcc
ctgggcgatctggataccctgatgcctcaggacatgatcaacgccaagccaatttcggcg
gcggtgaaagagttcttcggttcaagccagctgtcccagtttatggaccagaacaacccg
ttgtccgagatcacgcacaaacgtcgtatctctgcattgggcccaggcggtctgacccgt
gaacgtgccggctttgaagttcgagacgtacacccgactcactacggtcgcgtgtgtcca
atcgaaacgccggaaggtccaaacatcggtctgatcaactccttgtccgtgtacgcacag
accaacgagtatggcttcctggaaaccccgtaccgccgcgtgcgtgacggcgtggttacc
gatgaaatcaactatctgtctgctattgaagaaggcaacttcgttatcgctcaggcgaac
tccaacctggatgaagaaggccgcttcgaagaagacctggttacctgtcgtagcaaaggc
gaatcaagcctgtttagccgcgaccaggttgactatatggacgtatcaacccagcaggtt
gtttctgttggtgcttcactgatcccattcctggaacacgatgacgccaaccgtgcattg
atgggtgcgaacatgcaacgtcaagcggtgccaaccctgcgtgctgacaagccgctggta
ggtaccggtatggaacgtgccgtagcggttgactccggtgttactgccgtagccaaacgt
ggtggtgtgatccagtacgtggatgcttcccgtatcgttatcaaagttaacgaagacgag
atgtacccgggcgaagcaggtatcgatatttataacctgaccaagtacacccgttctaac
cagaacacctgtatcaaccagatgccttgtgtgaatctgggtgagccaatcgagcgcggc
gacgtgctggcagatggcccgtctacagacctgggtgaactggcattgggtcagaacatg
cgcgtcgcgttcatgccttggaacggctacaacttcgaagactccattttggtctccgag
cgtgtagtacaggaagatcgcttcaccaccatccacattcaggaactggcttgcgtgtct
cgcgacaccaaactggggccggaagagatcaccgccgacatccctaacgtgggtgaagca
gcgctctccaaactggatgaatccggtatcgtgtatatcggtgcagaagtgaccggtggc
gacattctggttggtaaggtaacgccgaaaggtgaaacccagctgacgccagaagagaag
ctgctgcgtgcgatcttcggtgagaaagcgtctgacgttaaagactcttctctgcgcgta
ccaaacggcgtttccggtacggttatcgacgtgcaggtctttacccgcgatggcgtggac
aaagacaagcgtgcgttggaaatcgaagagatgcagctgaagcaggcgaagaaagacctg
actgaagaactgcagatcctggaagctggcctgttcgctcgtatccatgcggtactggtt
tctggtggtatcgaagccgagaagctgagcaaactgccacgcgatcgctggttggaactg
ggcctgaccgacgaagacaagcaaaaccagctggagcagctggcagagcagtacgacgaa
ctgaaatccgacttcgagaagaagctggatgccaagcgtcgtaagatcacccaaggcgac
gatctggcaccaggcgtgctgaaaatcgtcaaggtgtatctggccgttaagcgtcagatc
caaccgggtgacaagatggcaggccgccacggtaacaagggtgttatctccaagatcaac
ccgatcgaagatatgccttacgatgaaaacggtacgccggttgacatcgttctgaacccg
ctgggcgttccatcgcgtatgaacatcggtcagatcctggaaactcacctgggtatggcg
gcgaaaggcattggtgagaagatcaaccaaatgctcaagcagcaccaggaagtggccaag
ctgcgtgaattcatccagaaggcttacgatctgggtgacggcgtttgccagaaagttgac
ctgaacaccttcaccgacgacgaagtcttgcgtctggcagagaacctgaaaaaaggtatg
ccgatcgcaaccccagtcttcgatggtgcgaaagagtcagaaatcaagcaactgctggaa
atgggcggtatcccgacttcaggtcagattacgctgtttgatggccgtaccggcgagcag
ttcgagcgccaggtaaccgtcggctatatgtacatgctgaaactgaaccacttggttgac
gataagatgcacgcgcgttctaccggttcttacagcttggttactcagcagccgctgggt
ggtaaggcgcaattcggtggtcagcgcttcggtgagatggaagtgtgggcgctggaagca
tacggcgcagcttacaccttgcaggaaatgcttaccgttaagtcggatgacgtcaacggc
cgtaccaagatgtacaaaaacatcgtggatggcgatcaccgtatggaaccaggcatgccg
gagtccttcaacgtactgttgaaagaaatccgctcgctgggtatcaacatcgaactggaa
ggcgactaa
DBGET
integrated database retrieval system
