Serratia fonticola DSM 4576: WN53_09905
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Entry
WN53_09905 CDS
T04030
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sfw
Serratia fonticola DSM 4576
Pathway
sfw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sfw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
WN53_09905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sfw03021
]
WN53_09905
03400 DNA repair and recombination proteins [BR:
sfw03400
]
WN53_09905
Enzymes [BR:
sfw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
WN53_09905
Transcription machinery [BR:
sfw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
WN53_09905
DNA repair and recombination proteins [BR:
sfw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
WN53_09905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AKG69395
UniProt:
A0A0F7D1Q5
LinkDB
All DBs
Position
2231917..2236140
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVVEGGMTNLERRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKNMDLEAECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERVYRAG
LASLHARVKVRITEEIKNTEGESVHQTSIIDTTIGRAILWMIVPQGLPYSIVNQPLGKKA
ISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPAKKAEIIEEAETE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSVEDVVNRDGVVEQQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHNGIMMTPVIEGGDVKEPLRERVL
GRVTAEDVIKPGTADILVPRNTLLNEKTCDLLEENSVDSVKVRSVVSCETDFGVCANCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGNLKL
SNVKFVMNAAGKLVITSRNTELKLIDEFGRTKESYKVPYGAVMGKGDGAEVNGGETVANW
DPHTMPVVTEVSGFIRFADMVDGQTITRQTDELTGLSSLVVLDSAERTGSGKDLRPALKI
VDAKGDDVLIPGTDMPAQYFLPGKAIVQLEDGIQIGAGDTLARIPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVISPLDGSDAYEEMIPKWRQLNVFE
GEIVERGDVVSDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKINDKHIEVIVRQM
LRKGTIVSAGSTEFLEGEQAEVSRVKIANRKLAAEGKIEATFSRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRKALGETPV
VPLVSAEEATANLAELLNAGNLGGSDE
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaagcgcaaactaagaccgaagagtttgatgcgatc
aagattgctctggcatcgccagacatgatccgttcatggtcgttcggtgaagttaaaaag
ccggaaaccattaactaccgtacgttcaaacctgagcgtgacggccttttctgcgcccgt
atctttgggccggtaaaagattacgagtgcctgtgcggtaagtacaagcgcttgaaacac
cgcggcgtgatttgtgagaagtgcggcgttgaagtgacccagaccaaagtacgccgtgag
cgtatgggccacatcgaactggcttccccaactgcgcacatctggttcctgaagtcgctg
ccttcgcgcatcggtttgctgctggatatgccgctgcgtgacatcgaacgtgtactgtac
ttcgaatcctacgtagtagtcgaaggcggtatgaccaacctcgagcgtcgtcagatcctg
actgaagagcagtatctggatgcgctggaagagtttggtgacgaattcgacgccaagatg
ggtgcggaagctattcaggccctgttgaaaaacatggatctggaagccgagtgtgagcag
ctgcgtgaagagctgaacgaaaccaactccgaaaccaagcgtaagaagctgaccaagcgt
atcaagctgctggaagcgttcgtgcaatctggtaacaaaccagagtggatgatcctgacc
gtgctgccggtactgccgccagatctgcgtccattggttccactggatggtggccgtttc
gcgacttcagatctgaacgatctgtaccgccgcgtgatcaaccgtaacaaccgtctgaaa
cgcctgctggatctggctgcgccggacatcatcgtgcgcaacgaaaagcgtatgctgcaa
gaagcggtagatgccctgctggataacggccgtcgcggtcgtgccatcaccggttccaac
aagcgtcctctgaaatctttggccgacatgatcaaaggtaagcagggtcgtttccgtcag
aacctgttgggtaaacgtgttgactactctggtcgttctgtaatcaccgtaggtccatac
ctgcgtctgcatcagtgcggtctgccgaagaaaatggcactggagctgttcaaaccgttc
atctacggcaagctggaactgcgtggcctggccacaacgatcaaagccgccaagaaaatg
gttgagcgcgaagaagctgtcgtttgggatatcctggacgaagtgatccgcgaacacccg
gtactgctgaaccgtgcaccaaccctgcaccgtttgggtattcaggcgtttgaaccggtt
ctgatcgaaggtaaagcgatccagctgcacccgctggtttgtgcggcatacaacgccgac
ttcgatggtgaccagatggctgttcacgtaccgttgacgctggaagcccagctggaagcg
cgtgcgttgatgatgtctaccaacaacatcctgtcaccagcgaacggcgagccaatcatc
gttccttctcaggacgttgtattgggtctgtactatatgactcgtgactgtgttaacgcc
aaaggcgaaggcatggttctgacgggtcctaaagaagctgaacgcgtttaccgcgccggt
ctggcctctctgcatgcacgcgtaaaagtgcgtattacagaagagatcaagaataccgaa
ggtgaatctgttcaccagacttcgattattgataccactatcggtcgcgccatcctgtgg
atgatcgtaccgcaaggtctgccgtactcgatcgtcaaccagcctttgggcaagaaagcg
atctccaagatgctgaacacctgttaccgcatcctgggcctgaagccgaccgtaatcttc
gctgaccagatcatgtacaccggttttgcttacgctgcccgttcaggcgcgtctgtaggt
atcgatgacatggttatcccagccaagaaagcagagatcatcgaagaagcggaaaccgaa
gttgccgagatccaggagcagttccaatctggtctggttaccgcgggcgaacgctacaac
aaagtgatcgatatctgggctgcggcgaacgaacgtgttgctaaagcgatgatggaaaac
ctgtcggttgaagacgtggttaaccgtgacggcgtggtggaacaacaagtttccttcaac
agcatctttatgatggccgactccggtgctcgtggttctgccgctcagatccgtcagttg
gcgggtatgcgtggcctgatggccaagccagatggctccatcattgaaacgccaatcact
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctccacgcacggtgctcgt
aaaggcttggcggataccgcactgaaaacggcaaactccggttatctgacccgtcgtctg
gttgacgtggcgcaggatctggtagtgaccgaagacgactgtggtactcacaacggcatc
atgatgactccggttatcgaaggtggtgacgttaaagagccactgcgtgaacgcgttctg
ggtcgtgtgactgctgaagatgtcatcaagccgggtacggctgacatcctggtgccacgt
aacaccctgctgaacgagaagacttgtgacctgttggaagagaactctgtcgacagcgtt
aaagtccgttccgtagttagctgtgaaaccgactttggtgtgtgcgccaactgctatggt
cgcgacctggcacgtggtcacatcatcaacaaaggtgaagccatcggcgttatcgcggcc
cagtccatcggtgagccgggtacacagctgacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcggcagcagaatccagcatccaggtgaagaacaaaggtaacctgaagctg
agcaatgtgaagttcgttatgaacgccgcaggcaagctggtaattacctcgcgtaatacc
gaactgaagctgatcgacgaattcggccgtaccaaagaaagctacaaagtgccttacggt
gccgtaatgggcaaaggtgatggtgcagaagttaacggcggcgaaaccgttgctaactgg
gatccacacaccatgccggttgtgaccgaggtgagcggtttcattcgcttcgccgatatg
gttgacggccagaccattacccgccagaccgacgaactgaccggtttgtcttctctggta
gtactggacagcgcagagcgtaccggtagcggtaaagacctgcgtccggcactgaaaatc
gttgatgccaaaggcgacgacgtattgatcccaggtactgatatgcctgctcaatacttc
ctgccgggtaaagcgattgtgcagctggaagacggcattcagatcggtgcgggtgatacc
ctggcgcgtattcctcaggaatccggcggtaccaaggatattaccggtggtctgccacgc
gttgctgatctgttcgaagcacgtcgtccgaaagagccggcaatcctggctgaaatcagc
gggattatctcgttcggtaaagagaccaaaggcaaacgtcgcctggtaatctctccactg
gacggcagcgacgcttacgaagagatgatccctaaatggcgtcagctcaacgtgttcgaa
ggtgaaattgtggaacgtggtgacgttgtttctgacggcccagaatctccacatgacatt
ctgcgtctgcgtggtgtgcatgcggttacccgctacatcaccaacgaagtgcaggaagtt
taccgtctgcaaggcgttaagattaacgataaacacatcgaagttatcgttcgtcagatg
ttgcgtaaagggaccatcgttagcgctggtagcaccgagttcctggaaggcgaacaggct
gaagtatcacgtgttaagattgctaaccgtaaacttgctgctgaaggcaagatcgaagca
accttctcacgcgatctgctgggtatcaccaaggcttccttggcgaccgagtccttcatc
tctgctgcatcgttccaggaaacgacgcgcgttctcaccgaagcggccgttgccggtaag
cgtgatgaactgcgcggcctgaaagagaacgtgatcgtgggccgtctgatcccagccggt
accggttacgcttatcaccaggatcgtatgcgccgtaaggctctgggtgaaactccggtt
gttccgctggttagcgcggaagaagcgacagccaacctggccgaattgctcaacgccggt
aacctgggtggcagtgacgaataa
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