Serratia fonticola DSM 4576: WN53_10625
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Entry
WN53_10625 CDS
T04030
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
sfw
Serratia fonticola DSM 4576
Pathway
sfw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WN53_10625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfw03019
]
WN53_10625
03016 Transfer RNA biogenesis [BR:
sfw03016
]
WN53_10625
Enzymes [BR:
sfw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
WN53_10625
Messenger RNA biogenesis [BR:
sfw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
WN53_10625
Transfer RNA biogenesis [BR:
sfw03016
]
Prokaryotic type
tRNA degradation factors
WN53_10625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
S1_2
S1_RRP5
OB_RRP5_4th
aRib
KH_2
KH-I_KHDC4-BBP
DUF6226
KH_SLS1_2
Motif
Other DBs
NCBI-ProteinID:
AKG69522
LinkDB
All DBs
Position
2384993..2387113
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AA seq
706 aa
AA seq
DB search
MLTPIIRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLT
VNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSV
NPQVNPDIVAMIGASAALSLSGIPFNGPIGSARVGYINNQYVLNPTTDELKESSLDLVVA
GTAGAVLMVESEADVLSEDQMLGAVVFGHDQQQIVIENINALVAEAGKPKWDWQAPAVNE
ALHARVTELAESRLGDAYHITEKQERYAQVDAIKDSVVETLLAQDETLDASEIQDILGTV
EKNVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR
DAQNIDELMGEKTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAMMPKPED
FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDENFVVLSD
ILGDEDHLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA
ISTPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT
DGDKAKFAIRRIEEITAEIEVGRVYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE
KVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATAPESAAAPAPEAE
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
ttgctgactccgattattcgcaaattccagtatggccaacacaccgtgacgcttgagacc
ggtatgatggcacgtcaagccactgctgccgtgatggtgagcatggatgacaccgcagta
ttcgtcaccgtagtaggccagaagaaagccaaaccaggccagagcttcttccctctgacc
gtgaactatcaggagcgtacctacgctgctggccgtatcccgggtagcttcttccgtcgt
gaaggccgtccgagcgaaggcgaaaccctgacttcccgtctgattgaccgcccgatccgc
ccactgttcccagatagtttcctgaacgaagtgcaagtgatcgccaccgtggtttccgtg
aacccacaggtaaacccagacatcgtcgcgatgatcggtgcctctgctgccctgagcctg
tccggtattccgttcaatggcccaatcggttctgctcgcgtgggttacatcaacaatcag
tacgtactgaacccaaccactgacgagctgaaagaaagcagcctggatctggtggttgcc
ggtaccgctggtgcagtactgatggtggaatccgaagctgacgtgctgagcgaagatcag
atgctgggcgcagtcgtgtttggccatgaccaacagcaaatcgttatcgaaaacattaac
gctctggttgctgaagcaggcaagccgaagtgggattggcaggcaccagcggttaacgaa
gcgctgcatgcgcgcgtaaccgagctggccgaaagccgtctgggcgatgcttaccacatc
accgaaaaacaagagcgttacgctcaggttgatgcgatcaaagacagcgtagtggaaact
ctgctggcgcaagacgagactctggacgcgtctgaaattcaggacatcctgggcaccgtt
gagaaaaacgtcgtacgtagccgtgtgctgcgtggcgagccgcgtatcgatggccgcgag
aaagacatgatccgtggtctggacgtgcgcactggcgttctgccgcgtacccacggttcc
gcactgttcacccgtggtgaaactcaggcgctggttaccgccactctgggtaccgcgcgt
gacgcacagaacattgatgagctgatgggcgagaaaaccgacagcttcctgttccactac
aacttccctccgtactctgttggtgaaaccggcatggttggttcaccgaagcgtcgtgaa
atcggccatggtcgtctggcaaaacgtggcgttttagctatgatgcctaaaccagaagat
ttcccgtacaccgtgcgtgtggtgtctgaaatcaccgaatccaacggttcttcttcaatg
gcttccgtctgtggtgcatctctggcactgatggatgcgggtgtgccaatcaaggcagcc
gttgcaggtatcgcaatgggcctggtgaaagaagacgaaaactttgtcgtactgtctgac
attctgggtgacgaagatcacctgggcgacatggacttcaaagtggccggtagccgcgat
ggtatcaccgcgctgcagatggacattaaaattgaaggtatcacccgcgaaatcatgcag
gtggctctgaaccaggccaagggtgcgcgtctgcacattctgggcgtgatggaacaggct
atcagcacgccacgtggcgatatctccgagttcgcaccgcgtattcacaccatcaagatc
aatccagacaagatcaaagatgtgatcggtaaaggtggttcagtcatccgtgcgttgacc
gaagaaactggcaccaccatcgaaattgaagatgacggtacagtgaagattgctgcgacc
gacggcgacaaagcgaagttcgctatccgccgcatcgaagagatcaccgctgagatcgaa
gttggccgtgtgtatcagggtaaagtgacccgtatcgttgattttggtgccttcgtggcc
atcggcggcggtaaagaaggcctggtgcacatctctcaaatcgccgacaagcgcgttgag
aaagtgaccgactatctgcagatgggtcaggaagtaccggttaaggtactggaagttgat
cgccagggccgtgtgcgtctgagcatcaaagaagctacagcgccagaatccgctgcggct
ccagcaccagaagcagaataa
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