Serratia fonticola DSM 4576: WN53_19180
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Entry
WN53_19180 CDS
T04030
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sfw
Serratia fonticola DSM 4576
Pathway
sfw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WN53_19180 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfw03019
]
WN53_19180 (rne)
03009 Ribosome biogenesis [BR:
sfw03009
]
WN53_19180 (rne)
Enzymes [BR:
sfw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
WN53_19180 (rne)
Messenger RNA biogenesis [BR:
sfw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
WN53_19180 (rne)
Ribosome biogenesis [BR:
sfw03009
]
Prokaryotic type
rRNA processing factors
WN53_19180 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
AKG71073
UniProt:
A0A0F7HER5
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All DBs
Position
complement(4326931..4330257)
Genome browser
AA seq
1108 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPSNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSSLQLPDGMGLIVRTAGVGKSADAL
QWDLSFRLKHWEAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLDLA
KEHIAALGRPDFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE
NRLRDAVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCTGTGTIRDNESLA
LSILRLIEEEALKENTKEVHAIVPVQVASYLLNEKRDSVSAIEKRQGGVKAIIVPNDQMQ
TPHYSVLRVRKGEETPTLSYLLPKLHEEEMAQPQDDAPVERKREQPALASFSLSQDAPPQ
EEEPVVSKPAVAAKPAVSSAPAAEAKPGLLSRLFGGLKSLFAGEETPVVEAKPAVAEKTE
DSDNRRQDRRGQRRQGSGRKGERGERKERGEGRDNRERGDREPRENREPREPRENRDDQR
RNNRRNAQQQTAPAAANTEVQTEEAAKVQREDQQQRREQRAERQRRRQEEKRQAPQDVKV
PETAEVVVASHSNDEDEDRHQQPTQRRQRRPLAQKVRVLSAEEELHRAAEELLAPKAPVA
KVEENQAPVLAESVKLLPQTIAAQSEDDAQADNRGNGENGMPRRSRRSPRHLRVSGQRRR
RYRDERYPNQSPMPLAGAFASPEMASGKVWVSYPVAQAAVYVEHEEAQAPVPVETVAVAA
APVAVEAAPVQPVVNEAPSVVETAPAVTESVATPVVEAQVETAPVDTVAVAAEPAAVVVD
ETVVSETAEDETVADAAVQAEPVITEPVVQEPVVEEAAVEEVVVEAVVAAPAEATVTAEP
EVVSAQPEAAPAPVQAAPVVAQPQPALYKHIATAPMTKAPAPDYQPEAAKTSEWQRPSFN
FDGKGSAGGHAAANQATAPATKPQPVND
NT seq
3327 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttgattaacgcaactcagcaggaagagttgcgtgttgcccttgtagat
ggacagcggctgtacgatctggatattgaaagccctggccatgagcagaaaaaagcgaat
atttacaaaggcaaaatcactcgaattgaacctagtcttgaggccgcgttcgttgattac
ggcgctgaaagacatggtttcctcccgctaaaagaaatcgctcgcgaatacttcccaagc
aattactcttcccatggtcgcccaaacatcaaagatgtgctgcgtgaaggccaggaagtc
atcgttcaggttgataaagaagaacggggtaataaaggcgctgccttgaccaccttcatc
agcctggccggtagctatctggttctgatgccgaacaatccgcgtgccggtggtatttcc
cgccgcatcgaaggtgacgaccgtaccgaactgaaagaagcgctctcctcgctgcaattg
ccagacggcatgggactgattgtccgcaccgctggcgttggcaaatctgccgacgctctg
caatgggacctgtcattccgcctcaagcactgggaagcgattaaaaaagccgccgaaggc
cgccctgctccgttcctgatccaccaggaaagcaatgttatcgtgcgagcattccgcgac
tacctgcgcccggacatcggcgaaatcctgatcgacaacccgaaggtactcgatctggcc
aaagagcacatcgctgccctgggccgcccggatttcagcagcaagatcaaattgtacagt
ggcgaaatcccgctgttcagccattaccagatcgaatcgcagatcgagtccgcgttccaa
cgtgaagtgcgtctgccttccggtggttccatcgtgatcgacaccaccgaagccttgacc
gctatcgatatcaactccgcgcgtgcaacccgcggtggcgacatcgaagaaaccgcattc
aataccaacctggaagccgcagatgaaattgctcgccaattgcgcctgcgcgacctgggt
ggcctgatcgttatcgactttatcgatatgaccccggttcgtcaccagcgtgaagtggaa
aaccgtctgcgcgatgccgtccgccaggaccgtgcccgcattcagattggccgtatttct
cgtttcggcctgttggaaatgtcccgtcagcgcctcagcccgtcactgggtgaatctagc
caccacgtgtgcccacgctgtaccggtaccggcaccatccgtgataacgaatcgctggcg
ctgtctattctgcgcctgatcgaagaagaagcgctgaaagagaacaccaaagaagttcac
gccatcgtaccggttcaggttgcttcctacctgctgaacgaaaaacgtgattctgtcagc
gcgatcgagaagcgccagggtggcgtgaaagcgatcatcgtgccaaacgatcagatgcag
actccgcattactccgtgctgcgcgtacgcaaaggtgaagaaacaccaaccctgagctac
ctgctgccgaagctgcatgaagaagaaatggcccagccgcaggatgatgcgccagtcgag
cgcaaacgcgagcaaccggctctggcatccttctctctgtcacaggatgctccaccgcag
gaagaagaacctgtggttagcaagcctgccgttgccgccaaaccggcagtttcatcagcc
cctgctgctgaagccaaacctggcctgttaagccgtctgttcggtggcttgaagtcactg
ttcgccggtgaagaaacgccagtggttgaagctaaaccggccgtagctgagaaaacggaa
gacagcgacaaccgtcgtcaggatcgtcgtggccaacgtcgccagggttctggccgtaaa
ggtgaacgtggcgagcgtaaagaacgtggcgaagggcgtgacaaccgtgaacgtggcgat
cgtgagccacgcgaaaatcgcgagccgcgtgaaccacgtgaaaaccgtgacgaccagcgc
cgcaacaaccgccgtaacgcacagcaacagactgcaccagcggctgccaataccgaagtg
caaactgaagaagcggccaaggtacagcgcgaagatcagcaacagcgccgtgaacaacgt
gccgagcgtcaacgccgtcgtcaggaagaaaaacgccaggctccgcaagacgtcaaagtg
ccagaaactgcggaagtcgttgttgccagccatagcaatgacgaagatgaagaccgtcat
cagcagccaacgcagcgtcgtcaacgccgtccactcgcgcagaaagttcgcgtcctgtcg
gcggaagaagaactgcatcgcgccgctgaagagctgttagcgcctaaagcgccggtcgcc
aaggttgaagaaaaccaggctccggtattggctgagagcgttaagctgttgccacagacc
attgcggcacagtctgaagatgacgcgcaagctgacaaccgtggtaacggtgaaaatggc
atgccacgtcgctctcgtcgttctccacgccatctgcgcgtcagtggtcagcgtcgtcgt
cgctatcgtgacgagcgttatccgaaccagtcaccaatgccgttggccggggcgtttgcc
tcaccagagatggcttcaggcaaggtttgggtcagctatcctgtggcacaagcagccgtc
tacgttgaacacgaagaagctcaagcgccagtgccggtagaaaccgtagccgttgctgct
gcaccggtggctgttgaagccgctcctgttcagcctgtagtcaacgaagcgccaagcgta
gttgaaaccgctccggcagtgactgaatcggtggcaacaccggtagttgaagcccaggta
gaaactgcacctgttgataccgtagccgtcgctgccgagccagccgctgttgtggtagat
gaaaccgttgtcagtgaaacagctgaggatgagacggttgcagatgcagcggtacaagct
gagccagttatcactgaacccgtggtgcaagagcctgtagttgaagaagccgcagtggaa
gaagttgtagtggaagccgttgtggcagcccctgcagaggctactgtaaccgcagagccg
gaagtggtgtcagcacagccagaggcagctccagctcctgtgcaggcggccccagtggtt
gcacaaccccaaccggcgctctacaagcatatcgctaccgccccgatgaccaaagcgcct
gcgccggattatcagccggaagccgcgaagaccagcgagtggcagcgcccttccttcaac
tttgacggaaaaggttctgctggcggccatgcagcggctaatcaggccactgctccagcc
accaaaccgcagccggttaacgactaa
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