Serratia fonticola DSM 4576: WN53_21720
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Entry
WN53_21720 CDS
T04030
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
sfw
Serratia fonticola DSM 4576
Brite
KEGG Orthology (KO) [BR:
sfw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfw03019
]
WN53_21720
Enzymes [BR:
sfw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
WN53_21720
Messenger RNA biogenesis [BR:
sfw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
WN53_21720
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
APHB_HrpA
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
WHD_HA2
NACHT
nSTAND3
T2SSE
nSTAND_NTPase5
PhoH
SLFN-g3_helicase
DUF6145
Motif
Other DBs
NCBI-ProteinID:
AKG72675
LinkDB
All DBs
Position
complement(4904505..4908347)
Genome browser
AA seq
1280 aa
AA seq
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MLRDQQRLQRRLQGARKVKSPEAQQAVATEIAGDIEQALQKVRSRAASCPKITYPESLPV
SQKKQDILAAIRDHQVVIVAGETGSGKTTQLPKICLELGRGVKGLIGHTQPRRLAARTVA
NRIADELETPLGGSVGYKVRFNDQVGENTLVKLMTDGILLAEIQQDRLLMQYDTLIIDEA
HERSLNIDFILGYLRELLPKRPDLKVIITSATIDPQRFSRHFNNAPIIEVSGRTYPVEVR
YRPVVDDADDTERDQLQAIFDAVDELGREGPGDILIFMSGEREIRDTADALTKLNLPHTE
VLPLYARLSNSEQNRVFQSHHGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSFRTK
VQRLPIEPVSQASANQRKGRCGRVSDGICIRLFSEQDFLSRPAFTDPEILRTNLASVILQ
MTSLGLGDIAAFPFVEAPDNRNIQDGVRLLEELGAIKTAENGHYQLTPQGRQLAQLPIDP
RLARMVLEAQKSGSVREMMIITSALSIQDPRERPMDKQQASDEKHRRFADKDSDFMAFVN
LWDYLKEQQKENSSSQFRRLCRNDFLNYLRVREWQDIYTQLRQVVKELGLPVNSVPSDYR
SVHTALLSGLLSHIGQKDADKQEFTGARNARFSIFPGSGLFKKPPKWTMVAELVETSRLW
GRIAARIEPEWIEPMAQHLVKHHYSEPHWSKSQGAVMASEKVTLFGLPIVAARPVNYSTI
DPLLCRELFIRHALVEGDWQTRHPFFAANLKLRAEVEELEHKSRRRDILVDDETLFSFYD
QRIPSDVVSGRHFDQWWKTAGKQNAELLNFEKEMLIKDGANKVSALDYPNYWYQGNLKLR
LTYQFEPGTDADGVTVHIPLPILNQVEEAGFEWQIPGIRRELVIALIKSLPKPMRRNFVP
APNYAEAFLGRATPLEMPLLDSLERELRRMTGVTVSREDWQWDQVPDHLKMTFRVVGEKH
KTLREGKDLAALRAQLKDKVQETLSAVADDGLEQSNLHIWSFGKLPEFYEQKRGGYSVKA
YPALVDEKDSVAIRLFDSEQEQQQAMWQGTRRLLLLNIPSPIKYLHEKLPNKAKLGLYFN
PYGKVLDLIDDCISCGIDKLIAEHGGPVWAEENFARLQELVRAELNETVVGVAKQVEQIL
TTVFNINKRLKGRVDISLALALSDIKAQLNGLVYRGFVTNNGWSRLPDTLRYLQAIERRL
EKLAIDPHRDRAQMIRVEQVQQAWQQWLNKLPPKRQQDEEVKGVRWMIEELRVSLFAQQL
GTPYPISEKRILQTIDQLSA
NT seq
3843 nt
NT seq
+upstream
nt +downstream
nt
atgctccgtgatcagcagcgcctgcaacgccggttgcaaggtgcgcgcaaagtcaaaagc
cccgaagctcaacaggcggttgccacagaaatagcgggtgatatcgagcaagccttgcag
aaggtgcgctcccgcgcggcctcgtgcccgaaaatcacttaccctgaaagcctgcctgtc
agccagaagaagcaggacattcttgccgccatccgcgatcatcaagtggtgatcgtggcg
ggtgaaaccggctccggcaagaccacgcagctaccgaaaatctgcctggagttagggcgc
ggcgtcaaaggcctgattggccacacgcaaccgcgccgcctggctgcacgcaccgttgcc
aaccgcattgccgatgagctggaaaccccgctgggtggcagcgtcggctacaaggtgcgc
ttcaacgatcaggtaggtgaaaataccctggtcaaactgatgaccgacgggatcttgctg
gccgaaatacagcaggatcgcctgctgatgcagtacgacaccttgatcatcgatgaggcg
cacgagcgcagtctgaacatcgatttcatcctgggttacctgcgggagctgttgccaaaa
cgcccggatctgaaggtgattatcacttcggccaccatcgatccgcagcgcttttctcgc
cacttcaacaatgcgccgatcattgaggtttctggccgtacctatcccgtggaggtgcgt
tatcggccggtggtagacgacgccgacgataccgaacgcgatcagcttcaggccatcttc
gacgcggtagacgaattggggcgtgaagggcctggcgatatcctgatctttatgagcggt
gagcgtgaaatccgtgacaccgccgatgcgctgaccaagctcaacctgccgcacaccgag
gtgctgccgctgtatgcccgcctgtccaacagtgaacagaatcgggtgttccagtcgcac
cacggccgccgcatcgtgctggcgaccaacgtggcagaaacctcgctgaccgtgccgggt
attaaatacgttatcgacccaggtacggcgcgtatcagccgctacagtttccgtaccaaa
gtgcagcgtttgccgatcgaaccggtttcgcaggcttctgctaaccagcgtaagggccgc
tgtgggcgtgtttcggacggtatctgtatccgcctgttctcggagcaggatttcctgtct
cgcccggcgtttaccgacccggaaattctgcgaaccaacctggcctcggtcattttgcag
atgacctcgctgggattgggcgatattgccgccttcccgtttgtcgaagcacctgataac
cgcaatattcaggacggcgtgcgcctgttggaagagttgggggcgatcaaaactgcggaa
aacggccactatcaactgaccccacagggccgtcagttggcgcagttgccgatcgaccca
cgcttggcgcgaatggtgttggaagcccagaagagtggcagcgtgcgtgagatgatgatc
atcacctcggcgttgtcgatccaggatccgcgtgagcggccaatggataagcaacaggcc
tccgatgaaaaacaccgccgcttcgccgacaaagactccgattttatggcgttcgtcaac
ctgtgggattacctgaaagagcagcagaaggaaaactcttccagccagttccgccgcctg
tgccgcaacgatttcctcaactatctgcgggtacgtgaatggcaggatatctacacccaa
ctgcgccaggtagtgaaagagctgggcctgccggtcaacagcgtgccttcggattatcgc
agcgtgcataccgcgctgctgagcggcctgctttcgcacattggccagaaggatgcggat
aagcaagagtttaccggtgcgcgcaacgcccgtttctccatcttccctggttccgggctg
ttcaagaagccgccgaaatggacgatggtggcagaactggtggaaaccagccgcctgtgg
ggccgtatagccgcgcgtatcgaaccagaatggattgagccgatggctcagcacctggtc
aagcatcattacagcgaaccgcactggtccaaatcccagggcgcggtgatggccagcgaa
aaggtcactctgtttgggttgccgatcgtcgcagctcgcccggtgaattacagcaccatc
gatccgctgctgtgccgtgaactgtttatccgccatgcgctggtggaaggtgactggcaa
acgcggcacccgttcttcgccgccaacctgaagctgcgtgccgaagtagaagagctggaa
cacaaatcgcgccgccgcgacattctggtggatgacgagacgctgttcagtttctacgat
cagcgtattccgagcgacgtggtgtccgggcgtcattttgaccagtggtggaaaaccgcc
gggaagcagaacgctgagctgctcaacttcgaaaaagagatgttgatcaaggacggagcc
aataaggtcagcgcgctggattatccgaactactggtatcagggcaacctcaagttgcgt
ctgacttaccagtttgagccgggtaccgacgccgatggcgtgacagtgcacatcccgtta
ccgatcctcaatcaggtggaagaggccggttttgagtggcaaatccccggtatccgccgt
gaactggtgatcgcgctgatcaaatcgttgcctaagccgatgcgccgcaattttgtgcca
gcaccgaactacgctgaagctttccttggccgggcaacgccgttggaaatgccgctgctg
gattcgctggaacgcgagctacgtcgcatgaccggcgtgacggtgtcacgtgaggattgg
cagtgggatcaggtgcccgatcatctgaaaatgaccttccgcgtggtgggtgagaaacac
aaaaccctgcgcgaaggcaaagatctggccgcgttgcgggcccagctcaaagataaggtg
caagagacgctgtcggccgtggctgatgatggcctggaacagagcaatctgcatatctgg
agctttggcaaactgcctgagttttatgagcagaagcgtggcggttactcggtcaaggct
tacccggcgctggtggacgaaaaagacagcgtagccatccgcctgtttgacagcgaacag
gagcagcagcaggccatgtggcaaggtacgcgccgtttgttgctgttgaacatcccttcg
ccgatcaaatatctgcatgagaagttgccgaacaaggccaagcttgggctgtattttaac
ccgtatggcaaggtattggatctgatcgacgactgtatctcctgcggcatcgacaagctg
attgccgaacacggcgggccggtgtgggcggaagagaactttgcccggctgcaagagttg
gtacgggccgagctgaatgaaaccgtggtaggcgtggccaaacaggtggaacagatcctg
acgacggtgttcaatatcaacaagcgcctgaaagggcgcgttgatatctcgttggcgttg
gcgctgtccgacatcaaggcccagcttaatggcctggtttaccgtggctttgtcaccaat
aatggttggagccgcctgccggacaccttgcgttatctgcaagcgattgagcgccgcctg
gagaaactggcgatcgatccgcaccgcgatcgcgctcagatgatccgggtggagcaggtc
caacaggcgtggcagcagtggctgaacaagctgccgccaaaacgccagcaggatgaagag
gtgaagggggtacgctggatgatcgaggagttgcgcgtcagcctgttcgcgcagcagttg
ggtacgccttacccgatttctgagaagcgtatcttgcagactatcgatcagctttctgcg
taa
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