Shigella flexneri 2457T (serotype 2a): S1198
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Entry
S1198 CDS
T00128
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sfx
Shigella flexneri 2457T (serotype 2a)
Pathway
sfx03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sfx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
S1198 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sfx03400
]
S1198 (mfd)
Enzymes [BR:
sfx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
S1198 (mfd)
DNA repair and recombination proteins [BR:
sfx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
S1198 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AAP16624
UniProt:
A0A0H2VUA6
LinkDB
All DBs
Position
complement(1161152..1164598)
Genome browser
AA seq
1148 aa
AA seq
DB search
MPEQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIS
QFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGILIVPVNTLMQRVCPH
SFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPY
RLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRD
PEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTL
ARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPD
LAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASD
RGRYLMIGAAEHGFVDKARNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIG
QPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENA
PLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFE
TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTL
LAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKF
KDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAI
GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV
NTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEG
NEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMR
ELEENAIA
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaacaatatcgttatacgctgcccgtcaaagcgggtgagcagcgtctgctgggc
gagttaaccggcgcagcctgtgcaacgctggtagcggaaattgccgaacgtcacgccggt
ccggtggtactcattgcaccagatatgcaaaatgctctgcgtttgcatgatgaaatcagc
cagttcaccgatcagatggtgatgaatctggcggactgggaaactcttccctacgacagt
ttttcgcctcatcaggacattatctcctcgcgcctttccaccctttaccagctaccgacg
atgcagcgtggcatactgattgttccggtgaatacgcttatgcagcgcgtttgcccacac
agttttctccacggtcatgcgctggtgatgaaaaaaggtcagcgcctgtcacgagatgca
ttacgaacccaactggacagcgccggttatcgccatgttgaccaggtgatggagcacggc
gaatacgccacgcgcggcgcgttgctggatctcttcccgatggggagtgagctgccttat
cgtcttgatttctttgatgatgaaatcgacagcctgcgggtgtttgacgtcgacagccag
cgcacgctggaggaagtagaagcgatcaatctgctgcccgcgcacgaatttccgaccgat
aaagcggcaattgaactgttccgcagccagtggcgcgataccttcgaagtgaagcgcgat
ccggaacatatttaccagcaagtgagtaaaggcacattacctgctgggatcgagtactgg
cagccattgttcttcagcgaaccactgccaccgctgttcagttatttccctgccaatacc
ttgctcgtgaatactggcgatctggaaaccagtgccgaacgtttccaggctgacacgctg
gcgcgttttgagaatcgcggcgtcgatccgatgcgcccgctgttgccaccacaatcgctc
tggctgcgggtggacgagctcttctcagagctgaaaaactggccccgagtgcagctaaaa
actgaacatttaccgacaaaagccgcgaatgccaatttaggtttccagaaactgccagac
ctggccgttcaggcgcaacaaaaagcgccgctggatgcgctgcgtaagttcctcgagact
ttcgacggtccggtggtgttctcggtagaaagtgaaggtcgccgtgaagcgctgggtgaa
ctgctcgcacgaattaaaattgctccgcaacgcattatgcgtcttgatgaagccagcgac
cgtgggcgttatctgatgattggcgctgccgaacatggttttgtcgataaggcgcgtaat
ctggcgctgatctgcgaaagcgatctgctcggtgaacgtgttgcccgccgtcgtcaggat
tctcgccgcaccatcaaccccgatacactgatccgtaaccttgcggagctgcatattggt
cagccggtggtccatctggagcacggcgtcggtcgctatgccggaatgaccacgctggaa
gctggcggcattactggcgagtacctgatgctcacctatgccaacgacgccaaactgtat
gttccggtgtcgtcactgcatctgattagccgttacgcaggtggcgcggaagaaaacgcc
ccgctgcataaacttggcggcgatgcgtggtcacgcgcgcggcagaaagcggcggaaaaa
gtgcgtgatgtggcggcggaattgctggatatctacgcgcaacgcgccgccaaagagggc
ttcgcgtttaaacacgatcgtgagcagtatcagttattctgcgacagcttcccgtttgaa
accacgccggatcaggcgcaggccattaatgcggtacttagcgacatgtgtcagccgctg
gcaatggatcgtctggtgtgcggcgatgttggctttggtaaaacagaagtggcgatgcgc
gccgctttcctggcagtagataaccacaagcaggtagcggtgttggtgcctaccaccctt
cttgcgcagcagcattacgacaacttccgcgaccgtttcgccaactggccggtacgtatc
gaaatgatctcccgtttccgcagcgccaaagagcagacgcaaatccttgcggaagtggcg
gaagggaaaatcgatattctgatcggtacgcacaaactgctgcaaagtgacgtcaagttt
aaagatttaggcctgctgattgtcgatgaagaacaccgcttcggggtgcgtcataaagag
cgcattaaagcgatgcgcgcgaacgtggatattctgacgcttactgcaacgccgatccca
cgtacgctgaatatggcaatgagcggaatgcgtgacctgtcgattatcgccacgccgccc
gcccgtcgtctggcagttaaaacctttgtccgtgagtatgacagcctggtggtccgggag
gcgatcctgcgtgaaattttgcgcggaggacaggtttattatctctacaatgatgtggaa
aacattcagaaagccgccgaacggctggcagaactggtgcctgaagcacggattgccatc
ggtcacgggcagatgcgcgagcgcgaactggaacgggtgatgaatgatttccatcatcaa
cgtttcaacgtgctggtttgtaccaccattatcgaaaccgggatcgacatcccgacagcc
aacaccattatcattgaacgtgcggatcacttcggtctggcgcagctgcaccagttacgc
ggtcgcgtcggacgttcacatcatcaggcatatgcatggctgctgacgccgcatccaaaa
gcgatgactaccgatgcacaaaaacgtcttgaagcgattgcctcgctggaagatctcggg
gcaggttttgcgctggcaacgcacgatctggagattcgcggcgcgggtgaactgcttggc
gaagaacaaagcggctcaatggaaaccatcggtttctcgctgtatatggagttgctggaa
aacgccgtcgatgcactgaaagccggacgcgagccgtcgctggaagatctcaccagccag
caaacagaagtcgagctgcggatgccgtcgctattgccagatgatttcatccctgacgtg
aacacgcgtctgtcgttctacaaacgtattgccagcgccaaaacggaaaacgaactggaa
gagatcaaagtcgagcttatcgatcgcttcggcctgctgccagatccggcgcgtaccctg
ctggatattgcccgtctgcgccagcaagcgcagaaactggggatcaggaagctggaaggt
aatgagaaaggcggggtgatcgaatttgccgagaagaatcacgttaatccggcctggttg
attggtttgctgcaaaaacagccgcagcattaccgccttgatggtccgacgcgcctgaaa
tttattcaggatttgagtgagcggaaaacgcgtatcgaatgggtacgccagtttatgcgt
gaactggaagagaacgcgatcgcttaa
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