Shigella flexneri 2457T (serotype 2a): S1472
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Entry
S1472 CDS
T00128
Symbol
hrpA
Name
(GenBank) helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
sfx
Shigella flexneri 2457T (serotype 2a)
Brite
KEGG Orthology (KO) [BR:
sfx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfx03019
]
S1472 (hrpA)
Enzymes [BR:
sfx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
S1472 (hrpA)
Messenger RNA biogenesis [BR:
sfx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
S1472 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_19
AAA_22
nSTAND3
T2SSE
NACHT
ResIII
PhoH
AAA_16
AAA_23
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
AAP16863
UniProt:
A0A0H2UZU5
LinkDB
All DBs
Position
1435201..1439046
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AA seq
1281 aa
AA seq
DB search
MLRDRLRFSRRLHCVKKVKNPDAQQAIFQEMAKEIDQAAGKVLLREAARPEITYPDNLPV
SQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLAARTVA
NRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEA
HERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSRHFNNAPIIEVSGRTYPVEVR
YRPIVEEADDTERDQLQAIFDAVDELSQESPGDILIFMSGEREIRDTADALNKLNLRHTE
ILPLYARLSNSEQNRVFQSHSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTK
VQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQ
MTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVD
PRLARMVLEAQKHGCVREAMIITSALSIQDPRERPMDKQQASDEKHRRFHDKESDFLAFV
NLWNYLGEQQKALSSNAFRRLCRTDYLNYLRVREWQDIYTQLRQVVKELGIPVNSEPAEY
REIHIALLTGLLSHIGMKDADKQEYTGARNARFSIFPGSGLFKKPPKWVMVAELVETSRL
WGRIAARIDPEWVEPVAQHLIKRTYSEPHWERAQGAVMATEKVTVYGLPIVAARKVNYSQ
IDSALCRELFIRHALVEGDWQTRHAFFRENLKLRAEVEELEHKSRRRDILVDDETLFEFY
DQRISHDVISARHFDSWWKKVSRETPDLLNFEKSMLIKEGAEKISKLDYPNFWHQGNLKL
RLSYQFEPGADADGVTVHIPLPLLNQVEESGFEWQIPGLRRELVIALIKSLPKPVRRNFV
PAPNYAEAFLGRVTPLELPLLDSLERELRRMTGVTVDREDWHWDQVPDHLKITFRVVDDK
NKKLKEGRSLQDLKDALKGKVQETLSAVADDGIEQSGLHIWSFGQLPESYEQKRGNYKVK
AWPALVDERDSVTIKLFDNPLEQKQAMWNGLRRLLLLNISSPIKYLHEKLPNKAKLGLYF
NPYGKVLELIDDCISCGVDQLIDANGGPVWTEEGFAALHEKVRAELNDTVVDIAKQVEQI
LTAVFNINKRLKGRVDMTMALGLSDIKAQMGGLVYRGFVTGNGFKRLGDTLRYLQAIEKR
LEKLAVDPHRDRAQMLKVENVQQAWQQWINKLPPARREDEDVKEIRWMIEELRVSYFAQQ
LGTPYPISDKRILQAMEQISG
NT seq
3846 nt
NT seq
+upstream
nt +downstream
nt
atgctgcgcgacagactgcgtttttctcgccgtctgcattgtgttaagaaggttaaaaat
cctgatgcacaacaggccattttccaggagatggcgaaagagattgaccaggcggcaggg
aaagtcctgctgcgtgaagcggcacgaccggaaatcacttatcctgacaatttaccggtt
agtcagaaaaaacaggacatactcgaagcgattcgtgatcaccaggtggtgatcgtcgcc
ggggaaaccggctccggtaaaacgactcagctaccgaaaatctgtatggagctggggcgc
ggtattaaagggctgatcggtcatacccagccgcgtcgcctggcggcacgaacggtggcc
aaccgtattgcggaagagctgaaaacggagccgggcggttgcatcggttacaaagtgcgt
ttcagcgatcacgtaagtgataacacgatggtcaagctgatgaccgacgggatcctgctg
gcggagatccagcaagaccgcctgctgatgcagtacgacaccatcattattgacgaagcg
cacgaacgcagcctgaatatcgattttctgctcggctatttgaaagagttgctgccgcgg
cgtcctgacctaaaaatcattatcacttccgcgactatcgacccggaacgcttttcgcgc
cactttaataatgcgccgattattgaagtctccggtcggacctatccggtggaagtgcgc
tatcgcccgattgttgaagaagccgatgacaccgagcgcgatcagttgcaggcgattttt
gacgccgtagacgaactaagccaggaaagccccggcgacattctgatctttatgagcggc
gagcgggaaattcgcgataccgccgatgcgctgaacaagctgaacttacgccataccgaa
atcttgccgctttatgcgcggctttcgaacagcgaacagaaccgcgtgttccagtcgcac
agcggacggcgcattgtgctggcgaccaacgtcgcggaaacctcgctgaccgtaccgggg
attaaatacgtcatcgaccccggtacagcgcgtatcagccgctacagctatcgcaccaaa
gtgcagcgtttgccgattgaacccatttcgcaggcgtctgccaatcagcgtaaaggccgc
tgtggtcgtgtgtccgaagggatctgtattcgtctctattccgaagacgatttcctctcg
cgcccggagtttaccgatccggagattctgcgtaccaacctggcctcggttattttgcag
atgaccgcgctggggctgggcgatatcgctgcgttcccgtttgtcgaagcaccggataaa
cgcaatatccaggatggcgtgcgtctgctcgaagaactgggcgcgatcaccacggatgaa
caggccagcgcctataaactgacgccgctcggtcgccagctctcgcagttgcctgtcgac
ccacgtctggcgcgtatggtgctggaagcgcaaaaacatggctgcgtgcgtgaggcgatg
attatcacgtccgcgctctccatccaggatccgcgcgaacgtccgatggacaaacagcag
gcatcggacgaaaaacatcgtcgcttccacgacaaagaatccgacttcctcgcgtttgta
aatctgtggaattatcttggcgagcagcaaaaggcgctttcttccaacgccttccgtcgc
ctgtgtcgtaccgattacctcaactatctgcgcgtgcgcgaatggcaggatatctacacc
cagttgcgccaggtggtgaaagaacttggcattccggtcaacagcgaaccggcggagtat
cgtgaaattcacatcgccttactgaccggtttgctttcccatatcggcatgaaagatgcc
gataaacaggaatataccggtgcacgtaacgcgcgtttctccatcttccccggttctggt
ttattcaaaaagccgccgaaatgggtaatggtggcggaactggtagaaaccagccgcctg
tgggggcgcattgctgcgcgtatcgacccggaatgggtagaacccgttgctcagcatttg
attaaacgcacctacagcgaaccgcactgggaacgggcgcagggcgcggtgatggcaacg
gaaaaagtcactgtttatggtttgccgattgttgctgcgcgcaaggtcaactacagccag
atcgattcggcgttatgtcgtgaactctttattcgccacgctctggtggaaggtgactgg
cagacgcgtcacgcattcttccgtgaaaacctgaaactgcgggccgaagtggaagagctg
gaacacaaatcacgtcgccgcgatattctggttgatgacgaaacgctgtttgagttctac
gaccagcgcatcagccacgatgtaatctccgctcgtcacttcgatagctggtggaaaaaa
gtcagccgcgaaacgcctgatttgctcaactttgaaaagagcatgttgatcaaagaaggg
gcggaaaaaatcagcaagctggattacccgaacttctggcatcagggcaatctcaagctg
cgtttgagctatcagtttgagccaggcgcggacgcggacggtgtgaccgtacatattccg
ctgccgttacttaaccaggttgaggaaagcgggtttgaatggcagatccccggtctgcgc
cgcgaattggtgattgctctgattaaatcgttgccgaaaccggtacgccgtaattttgtg
cctgcaccaaactacgccgaagcgtttttaggccgcgtcacaccgctggagttaccgttg
ctcgacagccttgagcgcgagttacggcggatgaccggcgttaccgttgaccgcgaagac
tggcactgggatcaggtgcccgatcacctgaaaatcaccttccgcgtggtggatgacaaa
aacaagaagctaaaagaagggcgctcgctacaagatctgaaagatgcgctgaaaggcaaa
gtgcaggaaacgctgtccgcggtggcggatgacggtatcgagcagagcggcttacatatc
tggagttttggtcagctgccggaaagttacgaacagaagcgtggcaactataaagtgaag
gcgtggccggcgctggtggatgaacgcgacagcgtgacgatcaaactgtttgataacccg
ctggagcaaaaacaggcaatgtggaatggtcttcgccgtctactgctgctaaatatttcc
tcgccgatcaagtatttacatgagaagttaccaaacaaagccaagctggggctgtacttt
aacccgtatggcaaagtgctggagctgatcgacgactgtatctcctgcggtgtggatcaa
ctgatcgacgccaatggtggcccggtctggacggaagaaggctttgctgcgctgcatgaa
aaagtgcgcgccgaactgaatgacacggtggtggatattgcgaagcaggtcgagcaaatc
ctcactgcggtgttcaatatcaacaaacgtctgaaagggcgggtggatatgaccatggca
ctggggctttctgatattaaagcgcagatgggcgggttggtatatcgcggttttgtcact
ggtaacggcttcaaacggctgggcgacacgctgcgatatttgcaggcgattgaaaaacga
ctggaaaaactggcggttgatccacatcgcgatcgtgcacagatgctgaaagtcgaaaac
gtccagcaggcgtggcagcaatggatcaacaaactgccgcctgcacgtcgtgaggatgaa
gacgtgaaagagatccgttggatgatagaagagctgcgcgttagttacttcgctcaacaa
cttggtacgccttatccgatttcagataagcgtattttgcaggcgatggagcagattagc
ggttaa
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