Shigella flexneri 2457T (serotype 2a): S1539
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Entry
S1539 CDS
T00128
Symbol
rnd
Name
(GenBank) RNase D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
sfx
Shigella flexneri 2457T (serotype 2a)
Brite
KEGG Orthology (KO) [BR:
sfx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sfx03016
]
S1539 (rnd)
Enzymes [BR:
sfx01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
S1539 (rnd)
Transfer RNA biogenesis [BR:
sfx03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
S1539 (rnd)
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
AAP16920
UniProt:
A0A9P2IXW9
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All DBs
Position
1499240..1500355
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AA seq
371 aa
AA seq
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MITTDDALASLCEAVRVFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDWS
PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEE
YSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECR
LMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHL
WSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMPGYR
KAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGELMAE
ALHNLLQEYPQ
NT seq
1116 nt
NT seq
+upstream
nt +downstream
nt
atgattaccacggacgatgcgctggcttctttgtgtgaagccgtccgtgtctttccggcg
atagccctggatactgaatttgttcgtacgcgcacttattacccgcagctggggttgatt
caacttttcgatggcgagcatctggcgctaattgatcctctcgggatcaccgactggtca
ccgctgaaagcgatcctgcgcgatccgtccatcacaaaatttctccatgcaggcagtgaa
gatctggaagtgttcctcaatgtctttggcgaattaccacaacccttgattgacacgcaa
atccttgctgccttctgcggacgcccgatgtcatggggtttcgcttccatggtggaagag
tattccggcgttacgctggacaagagtgaatcgcgcaccgactggctggccagaccgctg
accgaacgtcagtgtgaatacgcagcggcggatgtctggtatctgttaccgatcaccgcc
aagcttatggtagaaacggaggcctccggctggctacctgcggcgctggatgaatgccgc
ctgatgcaaatgcgtcgtcaggaagtcgttgcgccggaagatgcctggcgtgatatcacc
aatgcctggcagttacgcacacgccaactggcctgtctgcaactgttagccgactggcga
ctgcgcaaggcgcgagagcgtgatctggcggtgaactttgtcgtgcgtgaagagcatttg
tggtcggtcgcgcgttatatgccgggaagtttaggcgaactggacagcctgggtttatcc
ggtagcgaaatccgctttcacggtaaaacgctgctggcgctggtggaaaaagcgcagaca
ttgccggaagatgccttaccgcagccgatgcttaacctgatggacatgcctggttatcgt
aaagcgtttaaagcgattaagtcgctgattactgacgtgagcgaaacgcataagatcagc
gccgaattgctggcatcgcgtcggcaaatcaaccaactgctgaactggcactggaaactg
aaaccgcagaacaatttgccggagctgatttccggctggcgtggtgagctgatggcggaa
gcattacacaatttattgcaggaatatccgcagtaa
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