Shigella flexneri 2457T (serotype 2a): S3420
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Entry
S3420 CDS
T00128
Symbol
deaD
Name
(GenBank) inducible ATP-independent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sfx
Shigella flexneri 2457T (serotype 2a)
Pathway
sfx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
S3420 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfx03019
]
S3420 (deaD)
03009 Ribosome biogenesis [BR:
sfx03009
]
S3420 (deaD)
Enzymes [BR:
sfx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
S3420 (deaD)
Messenger RNA biogenesis [BR:
sfx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
S3420 (deaD)
Ribosome biogenesis [BR:
sfx03009
]
Prokaryotic type
rRNA helicases
S3420 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_C
ResIII
CMS1
AAA_22
Cas3-like_C_2
DRTGG
Motif
Other DBs
NCBI-ProteinID:
AAP18484
UniProt:
P0A9P8
LinkDB
All DBs
Position
complement(3289294..3291234)
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AA seq
646 aa
AA seq
DB search
MMSYVDWPPLILRHTYYMAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNG
RDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRG
VNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLR
MGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQS
YWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQAL
REQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAG
RALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQY
RALLSKIQPTAEGEELDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDR
NDRGPRGDREDRPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIK
LFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERR
EGGRNFSGERREGGRGDGRRFSGERREGRAPRRDDSTGRRRFGGDA
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgatgagttatgtagactggccgccattaattttgaggcacacgtactacatggctgaa
ttcgaaaccacttttgcagatctgggcctgaaggctcctatccttgaagcccttaacgat
ctgggttacgaaaaaccatctccaattcaggcagagtgtattccacatctgctgaatggc
cgcgacgttctgggtatggcccagacggggagcggaaaaactgcagcattctctttacct
ctgctgcagaatcttgatcctgagctgaaagcaccacagattctggtgctggcaccgacc
cgcgaactggcggtacaggttgctgaagcaatgacggatttctctaaacacatgcgcggc
gtaaatgtggttgccctgtacggcggccagcgttatgacgtgcaattacgcgccctgcgt
caggggccgcagatcgttgtcggtactccgggccgtctgctggaccacctgaaacgtggc
actctggacctctctaaactgagcggtctggttctggatgaagctgacgaaatgctgcgc
atgggcttcatcgaagacgttgaaaccattatggcgcagatcccggaaggtcatcagacc
gctctgttctctgcaaccatgccggaagcgattcgtcgcattacccgccgctttatgaaa
gagccgcaggaagtgcgtattcagtccagcgtgactacccgtcctgacatcagccagagc
tactggactgtgtggggtatgcgtaaaaacgaagcactggtacgtttcctggaagcggaa
gattttgatgcggcgattatcttcgttcgtaccaaaaacgcgactctggaagtggctgaa
gctcttgagcgtaacggctacaatagcgccgcgctgaacggtgacatgaaccaggcgctg
cgtgagcagacactggaacgccttaaagacggtcgtctggacatcctgattgcgaccgac
gttgcggcccgtggcctggacgttgagcgtatcagcctggtggttaactacgatatcccg
atggattctgagtcttacgttcaccgtatcggtcgtaccggtcgtgcgggtcgtgctggc
cgcgcgctgctgttcgttgagaaccgcgagcgtcgtctgctgcgcaacattgaacgtact
atgaagctgactattccggaagtagaactgccgaacgcagaactgctgggcaaacgccgt
ctggaaaaattcgccgctaaagtacagcagcagctggaaagcagcgatctggatcaatac
cgcgcactgctgagcaaaattcagccgactgcagaaggtgaagagctggatctcgaaact
ctggctgcggcactgctgaaaatggcacagggtgaacgtactctgattgttccgccagat
gcgccgatgcgtccgaaacgtgaattccgtgaccgtgatgaccgtggtccgcgcgatcgt
aacgaccgtggcccgcgtggcgaccgtgaagatcgtccgcgtcgtgaacgtcgtgatgtt
ggcgatatgcagctgtaccgcattgaagtgggccgcgatgatggtgttgaagttcgtcat
atcgttggcgcgattgctaacgaaggcgacatcagcagccgttacatcggtaacatcaag
ctgtttgcttctcactccaccatcgaactgccgaaaggtatgccgggtgaagtgctgcaa
cactttacgcgcactcgcattctcaacaagccgatgaacatgcagttactgggcgatgca
cagccgcatactggcggtgagcgtcgtggcggtggtcgtggtttcggtggcgagcgtcgt
gaaggcggtcgtaacttcagcggtgaacgccgtgaaggtggtcgtggtgatggtcgtcgt
tttagcggcgaacgtcgtgaaggccgcgcaccgcgtcgtgatgactctaccggtcgtcgt
cgtttcggtggtgatgcgtaa
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