Shigella flexneri 2457T (serotype 2a): S4321
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Entry
S4321 CDS
T00128
Symbol
rtcB
Name
(GenBank) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sfx
Shigella flexneri 2457T (serotype 2a)
Brite
KEGG Orthology (KO) [BR:
sfx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sfx03016
]
S4321 (rtcB)
Enzymes [BR:
sfx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
S4321 (rtcB)
Transfer RNA biogenesis [BR:
sfx03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
S4321 (rtcB)
Prokaryotic type
tRNA splicing ligases
S4321 (rtcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
AAP19278
UniProt:
A0A9P2IYX5
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All DBs
Position
4243367..4244593
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AA seq
408 aa
AA seq
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MNYELLTTENAPVKMWTKGVPVEADARQQLINTAKMPFIFKHIAVMPDVHLGKGSTIGSV
IPTKGAIIPAAVGVDIGCGMNALRTALTAADLPENLAELRQAIETAVPHGRTTGRCKRDK
GAWENPPFNVDAKWAELEAGYQWLTQKYPRFLNTNNYKHLGTLGTGNHFIEICLDESEQV
WIMLHSGSRGIGNAIGTYFIDLAQKEMQDQLETLPSRDLAYFMEGTEYFDDYLRAVAWAQ
LFASLNRDAMMENVVTALQSITQKTVRQPQTLAMEEINCHHNYVQKEQLFGEEIYVTRKG
AVSARAGQYGIIPGSMGAKSFIVRGLGNEESFCSCSHGAGRVMSRTKAKKLFSVEDQIRA
TAHVECRKDAEVIDEIPMAYKDIDAVMAAQSDLVEVIYTLRQVVCVKG
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgaattacgaattactgaccactgaaaatgccccggtaaaaatgtggaccaaaggcgtg
ccggtagaagccgatgcgcgtcagcaacttattaatacggcgaagatgccgtttattttc
aaacatattgcggtaatgcctgatgtacacctgggtaaaggttccaccattggtagcgtg
atcccgaccaaaggggcgattattccggcggcggtgggcgtggatattggctgtggaatg
aacgcgctgcgtaccgcgttaacggcggcagacctgcctgaaaacctggcggagctgcgt
caagcgattgaaacggccgtaccacacgggcgtactaccgggcgttgtaaacgtgataaa
ggcgcatgggaaaacccgccttttaacgtcgatgcgaaatgggctgagctggaggccggt
tatcagtggttaacgcaaaaatatccgcgtttccttaacactaacaactataaacacctg
ggaacgctgggaacgggtaaccactttattgaaatctgccttgatgagtcggagcaggtg
tggattatgctgcactccggttcacgcggaattggtaacgccatcgggacttactttatc
gatctggcgcaaaaagagatgcaggaccaacttgagacgttgccgtcgcgtgatctggcg
tactttatggaaggtacggaatactttgatgattacctaagagccgtggcctgggcgcag
cttttcgccagccttaaccgcgatgcgatgatggaaaatgtggtaacggcgttgcagagc
attacgcagaaaacggtcagacagccacaaacgctggcgatggaagagatcaactgtcac
cacaactatgtgcaaaaagaacagctctttggtgaagagatctacgtgacgcgtaaaggt
gcggtgtctgcgcgtgctggtcaatatggaattattcccggttcgatgggagcaaaaagc
tttatcgtccgtgggctgggaaatgaagagtcgttctgttcgtgcagccacggtgccggg
cgggtaatgagccgaactaaagcgaaaaaactgttcagcgtggaagaccaaattcgtgcc
accgcgcatgtggaatgccgtaaagatgccgaagtgatcgacgaaatcccgatggcgtat
aaagatattgatgcggtgatggcggcacaaagcgatctggtggaagttatctacaccctg
cgtcaggtggtgtgcgtaaaaggataa
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