Streptomyces fagopyri: GFH48_12140
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Entry
GFH48_12140 CDS
T06986
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
sfy
Streptomyces fagopyri
Pathway
sfy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GFH48_12140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfy03019
]
GFH48_12140
Messenger RNA biogenesis [BR:
sfy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GFH48_12140
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
QFZ73897
UniProt:
A0A5Q0LBG9
LinkDB
All DBs
Position
complement(2827296..2828981)
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AA seq
561 aa
AA seq
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MSHPHPELGPPPKLPQGGLRVTPLGGLGEIGRNMTVFEYGGRLLIVDCGVLFPEEEQPGI
DLILPDFTSIRDRLDDIEGIVLTHGHEDHIGGVPFLLREKPDIPLIGSKLTLALIEAKLQ
EHRIRPYTLEVAEGHRERIGPFDCEFVAVNHSIPDALAVAIRTPAGMAVHTGDFKMDQLP
LDGRLTDLHAFARLSEEGIDLLLSDSTNAEVPGFVPPERDISNVLRQVFAGASKRIIVAS
FASHVHRIQQILDAAHEYGRRVAFVGRSMVRNMGIARDLGYLKVPPGLVVDVKTLDDLPD
HEIVLVCTGSQGEPMAALSRMANRDHQIRIVQGDTVILASSLIPGNENAVYRVINGLTRW
GANVVHKGNAKVHVSGHASAGELLYFYNICKPRNLMPVHGEWRHLRANAELGALTGVPHD
RIVIAEDGVVVDLIGGKAKIAGKVQAGYVYVDGLSVGGVGEPALKDRKILGDEGIISVFV
VMDSSTGKITGGPHVHARGSGIEDSAFTDVVPRVTEVLERSAQDGVVEPHQMQQLIRRTL
GKWVSDNYRRRPMILPVVVEV
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
ttgagtcatccgcatcctgaactcggcccgccgcccaagcttccccaggggggcctgcgg
gtcaccccgctcggcggcctcggtgaaatcggccggaacatgaccgtcttcgaatacggc
ggccgtctgctgatcgtcgactgcggagtgctcttccccgaggaggagcagcccggaatc
gacctgatcctgccggacttcacgtccatcagggaccgcctcgacgacatcgagggcatc
gtcctcacgcatggccacgaggaccacatcggtggtgtcccgttcctcctgcgtgaaaag
ccggacatcccgctgatcggctccaagctgaccctcgcgctgatcgaggcgaagctccag
gagcaccgcatccgcccctacacgctcgaagtcgcggagggccaccgcgagcgcatcggc
cccttcgactgcgagttcgtcgcggtcaaccactccatcccggacgccctcgcggtcgcc
atccgcacccccgcgggcatggcggtgcacaccggcgacttcaagatggaccagctcccg
ctggacggccggctcacggacctgcacgcgttcgcacgcctgagcgaggaaggtatcgac
cttcttctctcggactccacgaacgccgaggtccccggcttcgtcccgccggagcgggac
atctcgaacgtgctgcgccaggtcttcgcgggcgccagcaagcgcatcatcgtggcgagc
ttcgccagccatgtgcaccgcatccagcagatcctggacgcggcccacgagtacggccgc
cgggtcgccttcgtcggccgttcgatggtccgcaacatgggcatcgcccgggacctgggc
tatctgaaggtcccgccgggcctggtcgtcgacgtcaagacgctggacgacctgccggac
cacgagatcgtcctcgtctgcaccggctcgcagggcgagccgatggccgcgctgtcccgc
atggccaaccgtgaccaccagatccgtatcgtccagggcgacacggtgatcctggcctcg
tcgctcatcccgggcaacgagaacgcggtctaccgcgtcatcaacggcctgacccgctgg
ggcgccaacgtcgtccacaagggcaacgccaaggtgcacgtctccggtcacgcctcagcc
ggcgagctgctgtacttctacaacatctgcaagccgcggaacctgatgccggtccacggc
gaatggcggcatctgcgcgccaacgccgagctgggcgcgctcaccggcgtgccgcacgac
cgcatcgtcatcgccgaggacggcgtcgtcgtcgacctcatcgggggcaaggcgaagatc
gccggcaaggtgcaggcgggttacgtgtacgtcgacggcctctcggtcgggggcgtcggc
gagcccgcgctcaaggaccgcaagatcctcggggacgagggcatcatctcggtcttcgtg
gtgatggactccagtacgggcaagatcaccggtggtccgcacgtgcacgcccgcggttcg
ggcatcgaggactccgcgttcaccgacgtcgtcccgagggtcaccgaggttctcgaacgc
tcggcccaggacggcgtggtcgagccccaccagatgcagcagctcatccgccgcacgctg
ggcaagtgggtctcggacaactaccgccggcgcccgatgatcctcccggtcgtcgtcgag
gtctga
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