Streptomyces fagopyri: GFH48_17545
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Entry
GFH48_17545 CDS
T06986
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sfy
Streptomyces fagopyri
Pathway
sfy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sfy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GFH48_17545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sfy03021
]
GFH48_17545
03400 DNA repair and recombination proteins [BR:
sfy03400
]
GFH48_17545
Enzymes [BR:
sfy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GFH48_17545
Transcription machinery [BR:
sfy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GFH48_17545
DNA repair and recombination proteins [BR:
sfy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GFH48_17545
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
TarH
Motif
Other DBs
NCBI-ProteinID:
QFZ74836
UniProt:
A0A5Q0LDS8
LinkDB
All DBs
Position
complement(4044499..4048398)
Genome browser
AA seq
1299 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITYVDDERRTRDLPSLEAHVSVERQQIENRRDADLEARAKKLETD
LAELEAEGAKADVRRKVREGAEREMKQLRDRAQREIDRLDEVWTRFKNLKVQDLEGDELL
YRELRDRFGTYFDGSMGAAALQKRLESFDLDEEAERLREIIRTGKGQKKTRALKRLKVVS
AFLQTSNSPKGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSARSVIVVGPQLKLHQCGLPKAMALELFKPFVMKRLVDLNHAQNIKSAKRMVERGR
TVVYDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILKPADGRPVTMPTQDMVLGLFFLTTDGELRDVKGE
GRAFGSTAEATMAFDAGELALQSAVDIRFPVGTIPPRGWTPPAQEEGEPEWQQGDTFRLR
TTLGRALFNELLPEDYPFVDYSVGKKQLGEIVNDLAERYPKVIVAATLDNLKAAGFYWGT
RSGVTVAISDIVVPEAKKEIVKGYEAQDEKVQKQYERGLITKDERTQELIAIWTKATNEV
AEAMNANFPKTNPIFMMVDSGARGNMMQMRQIAGMRGLVSNAKNETIPRPIKASFREGLS
VLEYFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTDRGLKLHIAERG
ADGVLRKAENVETSVYARALAEDITVDGKVLAPANTDLGDVLIDELVKHGIEEVKTRSVL
TCESAVGTCAMCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDIT
QGLPRVVELFEARTPKGVAPISEAAGRVRIEETEKTKKIVVTPDDGSDETAFPISKRAKV
MVREGDHVEVGQKLTFGATNPHDVLRILGQRAVQVHLVGEVQKVYNSQGVSIHDKHIEII
IRQMLRRVTIIESGDAELLPGELVERSKFETENRRVVQEGGHPASGRPQLMGITKASLAT
ESWLSAASFQETTRVLTDAAINAKSDSLIGLKENVIIGKLIPAGTGLSRYRNIRVEPTEE
AKAAMYSAVGYDDIDYSPFGTGSGQAVPLEDYDYGPYNQ
NT seq
3900 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgatgagctccggatcggtctggccaccgctgacgacatc
cgtcagtggagccacggcgaggtcaagaagcccgagaccatcaactaccgcaccctcaag
cccgaaaaggacggactcttctgcgagaagatcttcggtccgacccgggactgggagtgc
tactgcggcaagtacaagcgcgtccgcttcaagggcatcatctgtgagcgctgtggcgtc
gaggtcactcgcgccaaggtgcgccgtgagcggatgggccacatcgagctggccgctccc
gtcacccacatctggtacttcaagggcgttccgtcgcgtcttggctacctgctcgacctc
gccccgaaggacctcgagaaggtcatctacttcgcggcgtacatgatcacgtacgtcgac
gacgagcgccgcacccgcgacctgccctcgctggaggcccacgtctccgtcgagcgccag
cagatcgagaaccgccgcgacgccgacctcgaagcccgcgccaagaagctcgagaccgac
ctggccgagctggaggccgagggcgccaaggccgacgtgcgccgcaaggtgcgcgagggt
gccgagcgtgagatgaagcagctgcgcgaccgtgcgcagcgcgagatcgaccgtctcgac
gaggtgtggacccgcttcaagaacctcaaggtccaggacctggagggcgacgagctcctc
taccgcgagctgcgtgaccgcttcggcacgtacttcgacggttcgatgggtgccgcggcg
ctgcagaagcgcctggagtccttcgacctcgacgaggaggccgagcgcctccgcgagatc
atccgcaccggcaagggccagaagaagacccgtgcgctcaagcgcctcaaggtcgtctcc
gcgttcctgcagaccagcaacagccccaagggcatggtgctcgactgcgtgccggtcatc
ccgccggacctgcgtccgatggtgcagctggacggtggccgcttcgcgacctccgacctg
aacgacctgtaccgccgcgtgatcaaccgcaacaaccgcctgaagcgccttctcgacctc
ggtgcccccgagatcatcgtgaacaacgagaagcgcatgctccaggaggccgtcgacgcg
ctcttcgacaacggccgtcgtggtcgcccggtcacgggccccggcaaccgtccgctgaag
tcgctgtccgacatgctcaagggcaagcagggtcgattccgtcagaacctgctcggcaag
cgtgtggactactccgcgcgttccgtgatcgtcgtcggtccgcagctgaagctgcaccag
tgcggtctgccgaaggccatggcgctggagctcttcaagccgttcgtgatgaagcgcctg
gtcgacctgaaccacgcgcagaacatcaagagcgccaagcggatggtcgagcgcggccgc
acggtcgtgtacgacgtcctggaagaggtcatcgccgagcacccggttctgctgaaccgt
gcgccgacgctgcaccgcctcggcatccaggccttcgagccgcagctggtcgagggcaag
gccatccagatccacccgctcgtctgcaccgcgttcaacgcggacttcgacggtgaccag
atggccgtccacctgcccctgtccgcagaggcgcaggccgaggcccgcatcctgatgctg
tcctcgaacaacatcctcaagcccgccgacggccgcccggtcacgatgccgacccaggac
atggtcctcggtctgttcttcctgaccacggacggcgagctgcgggacgtcaagggcgag
gggcgcgcgttcggctccacggccgaggcgaccatggcgttcgacgccggggagctcgcg
ctccagtcggccgtcgacatccgcttcccggtgggcaccatcccgccgcgcggctggacc
ccgccggcgcaggaggagggcgagcccgagtggcagcagggtgacaccttccgcctccgt
acgaccctgggccgcgcgctcttcaacgagctgctgcccgaggactacccgttcgtcgac
tactcggtgggcaagaagcagctcggagagatcgtcaacgacctcgccgagcgctacccc
aaggtcatcgtggcggcgacgctcgacaacctgaaggcggccggcttctactggggcacc
cgctccggcgtcaccgtggccatctccgacatcgtcgttcccgaggcgaagaaggagatc
gtcaagggctacgaggcgcaggacgagaaggtccagaagcagtacgagcgcggtctgatc
accaaggacgagcgcacgcaggagctcatcgcgatctggaccaaggcgaccaacgaggtc
gccgaggcgatgaacgcgaacttcccgaagacgaaccccatcttcatgatggtcgactcg
ggtgcccgcggaaacatgatgcagatgcgtcagatcgccggtatgcgtggtctggtgtcg
aacgccaagaacgagacgatcccgcgtccgatcaaggcctccttccgtgagggcctgtcg
gtgctggagtacttcatctcgacccacggtgctcgtaagggtctggcggacaccgctctg
cgtaccgccgactcgggttacctcacccgtcgtctggtcgacgtctcccaggacgtcatc
atccgcgaggaggactgcggcaccgaccgcggcctcaagctgcacatcgcggagcgcggc
gcggacggcgtgctgcgcaaggcggagaacgtcgagaccagcgtgtacgcccgtgcgctg
gccgaggacatcaccgtcgacggcaaggtgctggccccggccaacaccgacctcggcgac
gtcctcatcgacgagctggtcaagcacggcatcgaggaggtcaagacccgttcggtcctg
acctgcgagtccgccgtcggtacctgcgccatgtgctacggccgttcgctggccaccggc
aagctggtcgacatcggtgaggcggtcggcatcatcgccgcccagtccatcggtgagccc
ggtacccagctgacgatgcgtaccttccacaccggtggtgtggccggtgacgacatcacc
cagggtctgccccgtgtcgtcgagctcttcgaggctcgtacgcccaagggtgtcgccccg
atctcggaggcggccggccgcgtccgtatcgaggagaccgagaagaccaagaagatcgtc
gtcaccccggacgacggcagcgacgagacggcgttcccgatctcgaagcgtgccaaggtc
atggtgcgtgagggtgaccacgtcgaggtgggccagaagctcaccttcggtgccaccaac
ccgcacgacgtgctgcggatcctcggtcagcgcgcggtccaggtccacctggtcggcgag
gtccagaaggtctacaactcgcagggtgtgtcgatccacgacaagcacatcgagatcatc
atccggcagatgctgcgccgggtgacgatcatcgagtcgggtgacgcggagctgctgccc
ggcgagctggtcgagcgttcgaagttcgagaccgagaaccgtcgtgtggtgcaggaaggc
ggccacccggcctccggccgtccgcagctgatgggtatcaccaaggcctcgctggcgacc
gagtcgtggctgtcggcggcgtccttccaggagacgaccagggttctgacggacgcggcg
atcaacgccaagtccgactccctgatcggcctcaaggagaacgtcatcatcggtaagctc
atcccggccggtacgggcctgtcccgttaccgcaacatccgggtcgagccgaccgaagag
gccaaggccgcgatgtactcggccgtcggctacgacgacatcgactactcgccgttcggc
acgggctccggccaggccgttccgctggaggactacgactacggtccgtacaaccagtaa
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integrated database retrieval system
