Streptomyces fagopyri: GFH48_21595
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Entry
GFH48_21595 CDS
T06986
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
sfy
Streptomyces fagopyri
Brite
KEGG Orthology (KO) [BR:
sfy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfy03019
]
GFH48_21595 (hrpA)
Enzymes [BR:
sfy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
GFH48_21595 (hrpA)
Messenger RNA biogenesis [BR:
sfy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
GFH48_21595 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_19
AAA_22
nSTAND3
AAA_16
NACHT
AAA_25
T2SSE
PhoH
SLFN-g3_helicase
DUF899
MetJ
Zeta_toxin
DUF6139
TsaE
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
QFZ75512
UniProt:
A0A5Q0LEH0
LinkDB
All DBs
Position
complement(4937837..4941805)
Genome browser
AA seq
1322 aa
AA seq
DB search
MSTHPAPALGDLAPRLAELSLRDAHRIGRRLEGARRIRKPEARTAVLAEIEAEVTKAEAR
MAERRSRVPTVTYPEQLPVSQKKSDIADAIRDHQVVIVAGETGSGKTTQIPKICLELGRG
VRGMIGHTQPRRIAARTVAERVADELDTPLGEAVGWKVRFTDQVNPDGTFVKLMTDGILL
AEIQTDRELRAYDTIIIDEAHERSLNIDFLLGYLAQLLPKRPDLKVVITSATIDPERFSR
HFGDAPIVEVSGRTYPVEVRYRPLLEEDGDDADRDQITAITDAVEELQAEGKGDILVFLS
GEREIRDTADALTKKNYRFTEVLPLYARLSHAEQHRVFQPHTGRRIVLATNVAETSLTVP
GIKYVIDPGTARISRYSHRTKVQRLPIEPVSQASANQRKGRCGRTSDGICIRLYSEDDFT
TRPEFTDAEILRTNLASVILQMTAAGLGDIEKFPFIDPPDHRNIRDGVQLLQELGALDPS
QKDVRKRLTETGRKLAQLPVDPRLARMVLEADKNGCAREVMVIAAALSIQDPRERPSEKQ
TQADQQHARFRDETSDFLAFLNLWRYVREQQKERGSSAFRRMCKQEFLNFLRIREWQDIY
TQLRTVAKQMGIHPNEEDAAEQSVHVSLLAGLLSHVGMKDVKETGGESGRGTGKNEYLGA
RSAKFAIFPGSALFKKPPRFVMSAELVETSRLWARVNARIEPEWVEPLAGHLLKRTYSEP
HWEKDQAAVMAYEKVTLYGVPIVAQRKVNYGRIDPETSRELFIRNALVEGDWRTHHKFFA
DNRRLLTEVEELEHRARRRDILVDDETLFDFYDQRVPADVVSGAHFDSWWKHKRHDEPEL
LDFERSMLINEKAGTVTKDDYPDSWRQGPLKFRVTYQFEPGADADGVTVHIPLQVLNQVT
DEGFDWQIPGLREEVVTELIRSLPKPIRRNYVPAPNVARAFLDRAVPLQEPLTTTMAREL
KRMVGVTLTADDFDWSRVPDHLKITFRIVDERRRKLAEDKDLEALQLQLKPKARKAISQA
AAATAEREGGESLERTGLTDWTIGSLARVFETRRAGQPVKAYPALVDDGDTVSVRLFDTE
AEQAQAMWKGTRRLILRNIPVNPGKFASDKLTNAQKLALSANPHGTVQALFDDCATAAAD
KLIGDFGGPAWDEESYRKLYDRVRAEIVDTTVRTVGQVQQVLAAWQACERRLKGVRSAVL
LANLADVRKQLDALVKPGFVTATGLRRLADLMRYLVAADRRLQQMPTNVQRDTTRMEKVH
EMQDEYAWLLEQMPQGRPVPQQVLDIRWMVEELRVSYFAHALGTAYPVSDKRIVKAIDAA
AP
NT seq
3969 nt
NT seq
+upstream
nt +downstream
nt
atgtctacgcaccctgcccccgccctcggcgatctcgccccccgcctggccgagctgtcc
ctgcgcgacgcgcaccggatcggccgcaggctcgagggcgcgcgccggatccgcaagccc
gaggcccggaccgccgtgctcgccgagatcgaggcggaggtcaccaaggccgaggcccgc
atggccgagcgccgctcccgcgtgcccaccgtcacgtaccccgagcagctcccggtcagc
cagaagaagtcggacatcgccgacgccatacgcgaccaccaggtcgtgatcgtcgccggc
gagaccggctccggcaagaccacccagatccccaagatctgcctcgaactcggccgcggc
gtccgcggcatgatcggccacacccagccccgccgcatcgccgcccgcacggtggccgaa
cgcgtcgccgacgagctggacacccccctgggcgaggccgtcggctggaaggtccgcttc
accgaccaggtcaacccggacggcaccttcgtcaagctcatgacggacggcatcctgctc
gccgagatccagaccgaccgcgagctgcgcgcctacgacacgatcatcatcgacgaggcc
cacgagcggtccctcaacatcgacttcctgctgggctacctcgcccagctgctccccaag
cgcccggacctcaaggtcgtcatcacctcggcgaccatcgaccccgaacgcttctcccgt
cacttcggcgacgccccgatcgtcgaggtcagcggccgcacctaccccgtggaggtccgc
taccgccccctcctggaggaggacggcgacgacgcggaccgcgaccagatcaccgcgatc
accgacgccgtggaggagctccaggccgagggcaagggcgacatcctcgtcttcctctcc
ggcgagcgcgagatccgcgacacggcggacgcgctcaccaagaagaactaccgcttcacc
gaggtcctccccctctacgcccgcctctcgcacgccgagcagcaccgcgtcttccagccc
cacaccggccgcaggatcgtgctcgcgaccaacgtcgcggagacgtccctcaccgtcccg
ggcatcaagtacgtcatcgacccgggcaccgcccgcatctcccgctacagccaccgcacc
aaggtccagcgcctgccgatcgaacccgtgtcgcaggccagcgccaaccagcgcaagggc
cgctgcggccgtacgtccgacggcatctgcatccgcctgtactccgaggacgacttcacc
acccgcccggagttcacggacgcggagatcctccggacgaacctggcgagcgtcatcctc
cagatgaccgcggccggcctcggcgacatcgagaagttccccttcatcgacccgccggac
caccgcaacatccgtgacggcgtgcagctcctccaggagctgggcgcgctggacccgtcc
cagaaggacgtgcgcaagcgcctgaccgagacgggccgcaagctcgcccagctcccggtc
gacccccgcctcgcccggatggtgctggaggccgacaagaacggctgcgcccgcgaggtg
atggtgatcgccgcggcgctgtccatccaggacccgcgcgagcgcccctccgagaagcag
acgcaggccgaccagcagcacgcccgcttcagggacgagaccagcgacttcctcgcgttc
ctgaacctgtggcggtacgtccgcgagcagcagaaggagcgaggctcctccgccttccgc
cgcatgtgcaagcaggaattcctgaacttcctgcgcatccgcgagtggcaggacatctac
acccagctgcgcacggtcgcgaagcagatgggcatccacccgaacgaggaggacgcggcc
gagcagagcgtccatgtctcgctcctggccggactgctctcccacgtcggcatgaaggac
gtgaaggagaccggcggcgagagcggccgcggcaccggcaagaacgagtacctcggcgcc
cgcagcgccaagttcgcgatcttccccggttcggcgctcttcaagaagcccccgcgcttc
gtgatgtcggccgagctggtggagacctcccgcctctgggcgcgggtcaacgcgaggatc
gagccggagtgggtggagccgcttgccgggcacctcctcaagcggacgtacagcgaaccg
cactgggagaaggaccaggcggcggtgatggcgtacgagaaggtcaccctctacggcgta
ccgatcgtcgcccagcggaaggtgaactacgggcggatcgaccccgagacgtcccgcgaa
ctcttcatccgcaacgccctcgtggagggcgactggcgcacgcaccacaagttcttcgcc
gacaaccgccggctgctgaccgaggtggaggagctggagcaccgtgcccggcgccgggac
atcctggtcgacgacgagacgctcttcgacttctacgaccagcgggtgccggcggacgtc
gtgtccggagcgcacttcgactcctggtggaagcacaagcgccacgacgagcccgagctt
ctcgacttcgagcgttcgatgctcatcaacgagaaggcggggaccgtcaccaaggacgac
taccccgactcgtggcgtcaggggcctctcaagttccgtgtgacgtaccagttcgagccg
ggcgcggacgccgacggcgtgaccgtccacatcccgctccaggtgctgaaccaggtgacg
gacgagggcttcgactggcagatcccgggtctgcgggaggaggtcgtgacggagctgatc
cgttccctccccaagcccatccgccgcaactacgtgcccgccccgaacgtcgcgcgggcc
ttcctcgaccgtgcggtccccctccaggagccgctcacgacgacgatggcccgcgagctg
aagcgcatggtcggtgtcacgctcaccgccgacgacttcgactggtcccgggtccccgac
catctgaagatcaccttccggatcgtcgacgagcggcgccgcaagctcgccgaggacaag
gacctcgaggccttgcagcttcagctgaagccgaaggcccgcaaggcgatctcacaggcc
gcggcggcgacggcggagcgcgagggcggcgagtccctggagcgcacgggcctgacggac
tggacgatcggctcgctggcgcgcgtcttcgagacacgccgggcgggccagccggtcaag
gcctacccggccctggtggacgacggcgacacggtctccgtacgcctcttcgacaccgag
gccgagcaggcgcaggccatgtggaagggcacccggcggctgatcctgcgcaacatcccg
gtgaacccgggcaagttcgcctcggacaagctgacgaacgcccagaagctcgccctgtcc
gccaatccgcacggcaccgtgcaggccctcttcgacgactgtgcgacggccgcggcggac
aagctgatcggcgacttcgggggcccggcgtgggacgaggagtcgtaccgcaagctgtac
gacagggtgcgcgccgagatcgtcgacacgacggtgcgcacagtcggtcaggtgcagcag
gtactggccgcctggcaggcctgtgagcgccgtctgaagggcgtcaggagcgccgtgctg
ctggcgaacctcgcggacgtgcgcaagcagctggacgccctcgtgaagcccggcttcgtc
acggcgaccggtctgcggcggctcgccgacctcatgcgctatctggtcgcggcggaccgc
cggctccagcagatgccgaccaacgtccagcgggacaccacccgcatggagaaggtccac
gagatgcaggacgagtacgcctggctcctggagcagatgccgcagggccggccggtcccg
caacaggtcctggacatccgctggatggtcgaggagctccgggtcagctatttcgcccac
gcgctcggcacggcgtaccccgtctccgacaagcgcatcgtgaaggcgatcgacgccgcg
gcaccgtaa
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