Streptomyces fagopyri: GFH48_29635
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Entry
GFH48_29635 CDS
T06986
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
sfy
Streptomyces fagopyri
Pathway
sfy03030
DNA replication
sfy03430
Mismatch repair
sfy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sfy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GFH48_29635 (dnaE)
03430 Mismatch repair
GFH48_29635 (dnaE)
03440 Homologous recombination
GFH48_29635 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sfy03032
]
GFH48_29635 (dnaE)
03400 DNA repair and recombination proteins [BR:
sfy03400
]
GFH48_29635 (dnaE)
Enzymes [BR:
sfy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
GFH48_29635 (dnaE)
DNA replication proteins [BR:
sfy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
GFH48_29635 (dnaE)
DNA repair and recombination proteins [BR:
sfy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
GFH48_29635 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
QFZ76880
UniProt:
A0A5Q0LIH4
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All DBs
Position
6766384..6769923
Genome browser
AA seq
1179 aa
AA seq
DB search
MSKPPFTHLHVHTQYSLLDGAARLKDMFDACNEMGMTHIAMSDHGNLHGAYDFFHTAKKA
GVTPIIGIEAYVAPESRRNKRKIQWGQPHQKRDDVSGSGGYTHKTIWAANRTGLHNLFKL
SSDAYAEGWLQKWPRMDKETISQWSEGLIASTGCPSGELQTRLRLGQFDEALKSAAEYQD
IFGKDRYFLELMDHGIEIERRVRDGLLEIGKKLGIPPLVTNDSHYTYAHEATAHDALLCI
QTGKNLSDPDRFRFDGTGYYLKTTDEMYAVDSSEAWQQGCANTLLVAEQIDTSGMFEAKN
LMPKFDIPEGFTEVTWFKEEVRLGMERRFPAGVPEDRQKQVEYEMDVIIQMGFPGYFLVV
ADFIMWAKNQGIAVGPGRGSAAGSIVAYAMGITDLDPIPHGLIFERFLNPERVSMPDVDI
DFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYPYAMGDRLTKAMP
ADVLGKGIDLNGITDSSHPRYSEAGEIRAMYENEPDVKKVIDTAKGVEGLVRQMGVHAAG
VIMSSEPIVDHAPVWVRHTDGVTITQWDYPQCESLGLLKMDFLGLRNLTIMDDAVKMVKS
NKGVDLDLLALPLDDPTTFELLQRGETLGVFQFDGGPMRSLLRLMKPDNFEDISAVSALY
RPGPMGMDSHTNYALRKNKLQEITPIHKELAEPLEEVLAVTYGLIVYQEQVQKAAQIIAG
YSLGEADILRRVMGKKKPDELAKNFVLFQEGAQKKGYSAEAIQALWDVLVPFAGYAFNKA
HSAAYGLVSYWTAYLKANYPAEYMAGLLTSVKDDKDKSAIYLNECRRMGIKVLPPNVNES
EQNFAAQGDDVILFGLSAVRNVGTNVVESIIKSRKAKGKYGSFPDYLDKVEAVACNKRTT
ESLIKAGAFDTMGHTRKGLTAQFEPMIDNVVQVKRKEAEGQFDLFGGMGDEDTSEPGFGL
DVEFTTDEWDKAYLLAQEREMLGLYVSDHPLFGLEHVLSDKADAGISQLTGGEHADGAVV
TIGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFPATYQLVSTQLVEDAVVFVKGRL
DKREDVPRLVAMELQVPDLSNAGTNAPVILTIPALKVTPPMVSRLGEILSHHKGESEVRI
RLQGPRKTTVLRLDRHRVKPDPALFGDLKVLLGPSCLAG
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
gtgtcgaagccgccgttcacgcacctgcacgtccacacccagtactcgctgctggacggt
gccgcgcggctcaaggacatgttcgatgcctgcaatgagatgggcatgacacacatcgcc
atgagcgaccacggcaacctgcacggggcgtacgacttcttccacacggccaagaaggcg
ggcgtcacgccgatcatcggcatcgaggcgtacgtcgccccggagtcccggcgcaacaag
cgcaagatccagtggggccagccccaccagaagcgcgacgacgtgtccggttcgggcggg
tacacgcacaagacgatctgggcggcgaaccggacgggactgcacaacctcttcaagctg
tcctcggacgcgtacgccgagggctggctccagaagtggccccggatggacaaggagacc
atctcccagtggtccgaggggctcatcgcctccaccggctgcccctccggcgagctccag
acccggctgcgcctcggccagttcgacgaggccctgaagtcggccgccgagtaccaggac
atcttcggcaaggaccgctacttcctggagctgatggaccacggcatcgagatcgagcgc
cgggtccgcgacggcctcctggagatcggcaagaagctcggcatcccgcccctggtgacg
aacgactcgcactacacgtacgcgcacgaggcgaccgcgcacgacgccctgctctgcatc
cagaccggcaagaacctctccgacccggaccgcttccgcttcgacggcaccggttactac
ctgaagacgacggacgagatgtacgccgtcgactcctccgaggcctggcagcagggctgc
gccaacaccctcctggtcgccgagcagatcgacacgagcggcatgttcgaggcgaagaac
ctcatgccgaagttcgacattccggaggggttcaccgaggtcacctggttcaaggaggaa
gtccggctcggcatggagcgccgcttccccgcaggcgtccccgaggaccgccagaagcag
gtcgagtacgagatggacgtcatcatccagatggggttcccggggtacttcctcgtcgtc
gccgacttcatcatgtgggccaagaaccagggcatcgcggtgggcccgggccgtggttcc
gcggccggctcgatcgtcgcctacgccatgggcatcaccgacctcgacccgatcccgcac
ggcctgatcttcgagcggttcctcaacccggagcgcgtctccatgcccgacgtcgacatc
gacttcgacgagcgcaggcgcgtcgaggtgatccggtacgtgaccgagaagtacggcgcc
gacaaggtcgccatgatcggcacctacggcaagatcaaggcgaagaacgccatcaaggac
tccgcgcgcgtactgggctacccgtacgcgatgggcgaccgcctcaccaaggcgatgccc
gccgacgtcctcggcaagggcatcgacctgaacggcatcaccgactcctcgcacccccgc
tacagcgaggcgggcgagatccgcgcgatgtacgagaacgagccggacgtcaagaaggtc
atcgacaccgccaagggcgtcgagggactggtccggcagatgggcgtgcacgccgccggc
gtcatcatgtccagcgaacccatcgtcgaccacgccccggtgtgggtgcggcacacggac
ggcgtgaccatcacgcagtgggactacccacagtgcgagtcgctcggcctgctgaagatg
gacttcctcggcctgcgcaacctgacgatcatggacgacgccgtcaagatggtgaagtcc
aacaagggcgtcgacctggacctgctggccctcccgctcgacgatccgacgaccttcgaa
ctgctccagcgcggcgagaccctcggcgtcttccagttcgacggcggccccatgcgctcc
ctgctgcgcctgatgaagcccgacaacttcgaggacatctccgccgtctcggcgctctac
cgtcccggcccgatgggcatggactcgcacacgaactacgcgctccgcaagaacaagctc
caggagatcaccccgatccacaaggagctggcggagcccctcgaagaggtcctggccgtc
acctacggcctgatcgtctaccaggagcaggtgcagaaggccgcgcagatcatcgccggg
tactcgctcggcgaggccgacatcctgcgccgcgtgatgggcaagaagaagcccgacgaa
ctggcgaagaacttcgtcctcttccaggagggcgcccagaagaagggctacagcgccgag
gccatccaggccctgtgggacgtcctggtccccttcgccggctacgcgttcaacaaggcg
cactcggccgcgtacggcctggtctcgtactggaccgcctatctgaaggcgaactacccg
gccgagtacatggccggtctgctcacctcggtcaaggacgacaaggacaagtccgcgatc
tacctcaacgagtgccggcgcatgggcatcaaggtgctgccgcccaacgtcaacgagtcc
gagcagaacttcgccgcgcagggcgacgacgtgatcctcttcggcctctccgccgtccgc
aacgtcggcacgaacgtcgtcgagtcgatcatcaagagccgcaaggccaaggggaagtac
ggctccttccccgactacctcgacaaggtcgaggccgtcgcctgcaacaagcgcaccacg
gaatcgctgatcaaggccggcgcgttcgacaccatggggcacacccgcaagggcctcacc
gcgcagttcgagccgatgatcgacaacgtggtgcaggtcaagcgcaaggaggccgagggc
cagttcgacctcttcggcggcatgggcgacgaggacaccagcgagcccggcttcggactc
gacgtcgagttcacgaccgacgagtgggacaaggcctatctgctcgcccaggagcgggag
atgctcggtctgtacgtctccgaccacccgctgttcggtctggagcacgtgctgtccgac
aaggccgacgcgggcatctcccagctcaccggcggtgagcacgcggacggtgccgtcgtc
accatcggcggcatcatctccggcctccagcgcaagatgaccaagcagggcaacgcctgg
gcgatcgccaccgtggaggacctcgcgggctccatcgagtgcatgttcttccccgcgacc
taccagctggtgtccacccaactcgtcgaggacgcggtcgtcttcgtcaaggggcgcctc
gacaagcgcgaggacgtgccgcgcctggtcgcgatggagctgcaggtcccggacctgtcc
aacgcgggcaccaacgcgcccgtgatcctcaccatcccggcgctgaaggtcaccccgccg
atggtcagcaggctcggtgagatcctcagccaccacaagggcgagagcgaggtgcgcatc
aggctccagggcccgcgcaagaccaccgtcctgcggctcgaccggcaccgggtgaagccc
gacccggccctcttcggcgacctgaaggtcctgttgggcccgtcctgcctggcgggctga
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