Streptomyces fagopyri: GFH48_32230
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Entry
GFH48_32230 CDS
T06986
Name
(GenBank) DEAD/DEAH box helicase
KO
K03727
ATP-dependent RNA helicase HelY [EC:
5.6.2.6
]
Organism
sfy
Streptomyces fagopyri
Brite
KEGG Orthology (KO) [BR:
sfy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfy03019
]
GFH48_32230
Enzymes [BR:
sfy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
GFH48_32230
Messenger RNA biogenesis [BR:
sfy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
GFH48_32230
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
SH3_HelY
DEAD
ResIII
DEXQc_Suv3
Helicase_C
MTR4-like_stalk
AAA_22
nSTAND_NTPase5
nSTAND3
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QFZ77332
UniProt:
A0A5Q0LJG6
LinkDB
All DBs
Position
7351257..7354118
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AA seq
953 aa
AA seq
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MIVLLSVAAGSLEGTMTEDLSPAERYAAARKRAVEQATALASFREMYDFGLDPFQIEACK
ALEAGKGVLVAAPTGSGKTIVGEFAVHLALQQGKKCFYTTPIKALSNQKYADLSRRYGAD
KVGLLTGDNSVNSDAPVVVMTTEVLRNMLYAGSQTLLGLGHVVMDEVHYLSDRFRGAVWE
EVIIHLPASVTLVSLSATVSNAEEFGDWLDTVRGDTEVIVSEHRPVPLFQHVLAGRRMYD
LFEEGEGQKKAVNPDLTRLARMEASRPSYQDRKRGRAMREADRERERRQRSRIWTPGRPE
VIERLDAEGLLPAITFIFSRAACEAAVQQCLYAGLRLNDEEARVKVREIVERRTDSIPPE
DLHVLGYYEWLEGLERGIAAHHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMPAR
SVVLEKLVKWNGEQHADITPGEYTQLTGRAGRRGIDVEGHAVVLWQRGFSPDHLAGLAGT
RTYPLRSSFKPSYNMAVNLVEQFGRHRSRELLETSFAQFQADKSVVGISRQVQRNEEGLE
GYKESMTCHLGDFEEYAGLRRELKDRETELAKQGVAQRRVEAAVALEKLKPGDIIHVPTG
KFAGLALVLDPGLPAGRSNGHRGFEQHDGPRPLVLTAERQVKRLASMDFPVPVEALERMR
IPKSFNPRSPQSRRDLASALRTKAGHIVPDRLRKRRAEAADDREIARLRTAIRAHPCHGC
NDREDHARWAERYHRLLRDTSQLERRIEGRTNTIARTFDRIVALLTELDYLRGDEATEHG
RRLARLYGELDLLASECLRAGVWEGLDPAELAACVSALVYESRVGDDAMAPKLPSGKAKA
ALGEMVRIWGRLDALEEDFRITQSEGVGQREPDLGFAWAAHEWASGKGLDEVLREAEMPA
GDFVRWCKQVIDVLGQISAAAPVSGGESSTVAKNARKAVDGLLRGVVAYSSVG
NT seq
2862 nt
NT seq
+upstream
nt +downstream
nt
ttgatcgtcctgttgtcagtggctgccggtagtctcgaaggcacgatgacagaggacctc
tcaccggccgagcggtacgcggcagcacggaagcgcgctgtcgagcaggccaccgcgctc
gcctccttccgcgagatgtacgacttcggcctcgaccccttccagatcgaggcctgcaag
gcgctcgaggcgggcaagggtgtgctcgtggccgcgcccaccggctcgggcaagacgatc
gtcggcgagttcgccgtccacctggccctccagcagggcaagaagtgcttctacacgacg
ccgatcaaggcgctgtcgaaccagaagtacgccgacctctcccgccgttacggcgcggac
aaggtcggcctcctcaccggggacaacagcgtcaactccgacgccccggtggtcgtcatg
accaccgaggtgctgcgcaacatgctgtacgcgggttcgcagacccttctcggcctcggc
catgtggtcatggacgaggtgcactacctctccgaccgcttccgcggcgccgtgtgggag
gaagtgatcatccaccttcccgcctcggtcaccctcgtgtcgctctcggcgaccgtctcg
aacgccgaggagttcggggactggctggacaccgtgcgcggcgacaccgaggtgatcgtc
tccgagcaccgtccggtgccgctgttccagcacgtgctcgccggacgccggatgtacgac
ctcttcgaggagggcgagggccagaagaaggcggtcaaccccgacctcacgcgcctggcc
cgcatggaggcgagccgtccgtcgtaccaggaccgcaagcgcgggcgagccatgcgcgag
gccgaccgggagcgcgagcgccggcagcgctcgcggatctggacgccgggccgccccgag
gtcatcgaacggctcgacgccgaaggcctgttgcccgccatcaccttcatcttcagccgc
gccgcctgcgaggccgccgtccagcagtgcctgtacgcgggcctgcggctcaacgacgaa
gaggcgcgggtgaaggtgcgcgagatcgtcgagaggcgcacggactccatcccgccggag
gacctgcacgtcctcgggtactacgagtggctggagggcctggagcggggcatcgcggcc
caccacgccggcatgctgcccacgttcaaggaggtcgtcgaggagcttttcgtacgcggc
ctggtgaaggccgtgttcgccaccgagaccctcgcgctcggtatcaacatgcccgcccgc
tcggtggtgctggagaagctagtcaagtggaacggcgaacagcacgccgacatcaccccc
ggtgagtacacccagctgaccggccgggcggggcgccgcggcatcgacgtcgagggccac
gccgtcgtgctgtggcagcgcggcttcagccccgaccacctggcgggactcgcgggcacc
cgcacctacccgctgcgctccagcttcaagccgtcgtacaacatggcggtgaacctggtc
gagcagttcggacggcaccgttcgcgcgaactcctggagacctccttcgcgcagttccag
gccgacaagtcggtcgtcgggatctcccggcaggtgcagcgcaacgaggagggactcgag
ggttacaaggagtccatgacctgccacctcggggacttcgaggagtacgcggggctgcgc
cgggagctcaaggaccgcgagaccgagctcgccaaacagggcgtggcgcagcgtcgcgtc
gaggcggcggtcgcgctggagaagctcaagccgggtgacatcatccatgtcccgaccggc
aagttcgccggtctggcgctggtgctggaccccggtctgcccgcgggccggtccaacggc
caccgaggcttcgagcagcacgacggtccgcgcccgctggtgctcaccgccgagcgtcag
gtcaagcggctggcctcgatggacttcccggtgccggtggaggcgctggagcggatgcgt
atcccgaagtccttcaacccgcgttccccgcagtcccgtcgcgacctcgcgtccgccctg
cgcaccaaggccgggcacatcgtccccgaccggctgcgcaagaggcgcgccgaggcggcc
gacgaccgcgagatcgcccggctgcgcacggcgatccgagcccacccctgccacgggtgc
aacgaccgtgaggaccacgcccgttgggccgagcgctaccaccggctgctgcgtgacacc
tcgcagctggagcgtcgcatcgagggccggacgaacaccatcgcccgcaccttcgaccgt
atcgtcgccctgctcaccgagctggactacctgcgcggcgacgaggccaccgaacacggc
agacgcctggcccggctgtacggcgaactcgacctgctggccagcgaatgcctgcgggcc
ggtgtctgggagggcctcgatccggcggaactcgccgcctgcgtctcggcgttggtctac
gagtcgagggtcggcgacgacgcgatggcgccgaagctgccctccggcaaggccaaggcc
gcgctgggcgagatggtccgcatctgggggcgtctggacgctctggaggaggacttccgg
atcacccagtccgagggcgtgggccagcgcgagccggatctcggtttcgcctgggcggcg
cacgagtgggcttccggcaagggtctcgacgaggtgctgcgcgaggcggagatgccggcc
ggcgacttcgtccggtggtgcaagcaggtcatcgacgtactgggccagatctcggccgcc
gcgccggtctccggtggagagagctcgacggtggcgaagaacgcccgcaaggcggtcgac
gggctgctgcgcggggtggtcgcctactcgtcggtgggctga
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