KEGG   Spiroplasma floricola: SFLOR_v1c02760
Entry
SFLOR_v1c02760    CDS       T05283                                 
Symbol
rnj
Name
(GenBank) ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
sfz  Spiroplasma floricola
Pathway
sfz03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sfz00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SFLOR_v1c02760 (rnj)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sfz03019]
    SFLOR_v1c02760 (rnj)
Messenger RNA biogenesis [BR:sfz03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     SFLOR_v1c02760 (rnj)
SSDB
Motif
Pfam: RNase_J_C RNase_J_b_CASP RMMBL DUF7088 DnaD_N
Other DBs
NCBI-ProteinID: AUB31333
UniProt: A0A2K8SD24
LinkDB
Position
308377..310092
AA seq 571 aa
MADIKFMALGGQDERGKNIFVISVNDNLYIFDAGIKFPERSVLGIDVIIPNFEYLKANSK
KIKGIFLSNPSSNNSGAISYILREIDVPVYCNELTTTILKYRNMKYRIKNRENNFKIIND
KDIVSFGDVKIEAFRTTAAFPESFGFAIHTEDGVIVYAGDYIIDGNEQSYFSTDMNHLNQ
ISQKGVLAFISDAEYASRIGYTVPNHRIDKFISAPMKDKKRRLILGMFEEDVFKLFEIIK
QAKANERKIAVYGKTITKVVESKVIQESLQISSKDIISIEEFMKSEDGILLLTGAGDLLY
TRLAKIAAGNDDKVEFTENDTIILATPPAAGVEKRHAEILDELARTNAKLVSLSDKNIWS
MRASYEDIKLMTRIMKPKSFIPIKGLYKDFLNAERAAIEAGVDKRNIQLINNGQILKISK
EGKLVIASDSIKTADVYVDGIGVGDIGAVVLNERKQLATDGAVIIGANVNNKTKELISLI
DIQMRGVIYITEENAIFKLMQKQIIDILEKYKNEATSNPNAYDLNVIKKEIVSRIRTTLK
QETGKQPIVLVIINELDGSFFEPKSNKIKNS
NT seq 1716 nt   +upstreamnt  +downstreamnt
atggcagatataaaatttatggccttaggtggtcaagatgagagaggaaaaaatattttt
gttatcagcgttaatgataacttatatatatttgatgcaggaattaaatttccagagaga
agtgttttaggaatagatgtaattattccaaattttgagtatttaaaagcaaattcaaag
aaaattaaagggatttttctttcaaatccaagttcaaataactcaggagcaattagttat
attttaagagaaatagatgttccagtttattgtaatgaacttacaacaacaattttgaag
tatagaaatatgaaatatagaattaaaaatagagaaaataattttaaaattattaatgac
aaagatatagtttcatttggggatgtaaaaattgaagcgtttagaacaactgcagcattt
ccagaatcttttggatttgcaattcatacagaagatggagttatagtttatgcaggagat
tacattattgatggaaatgagcaatcatatttttcaacagatatgaatcatttaaatcaa
atatctcaaaaaggagttttagcttttataagtgatgcagagtatgcttcaagaattggc
tatactgttccaaatcacagaattgataaatttatttcagcaccaatgaaagataaaaaa
agacgtctaattttaggtatgtttgaagaagacgtatttaaactatttgaaataataaaa
caagcaaaagcaaatgaaagaaaaattgctgtttatggaaaaacaattacaaaagtagtt
gaatcaaaagtaattcaagagagtttacaaatttcttcaaaagatattataagtattgaa
gagtttatgaaatcagaagatggaattttgcttttaacaggagcaggagatcttttatat
acaagacttgctaaaattgcagctggaaatgatgataaagttgagtttacagaaaatgat
acaattattttagcaactcctccagcagctggagttgaaaaaagacatgcagaaatttta
gatgaattggcaagaacaaatgctaagttagtatcattgagtgataaaaatatttgatcg
atgagagcaagttatgaagatattaaattaatgacaagaataatgaaaccaaaatcattt
attcctattaaaggtttatataaagattttttaaatgcagaaagagcagctattgaagca
ggagtagacaaaagaaatattcaattaattaataatgggcaaattttaaaaatatctaaa
gaaggtaaattagtaatcgcatctgattcaatcaaaacagcagatgtttatgtagatgga
attggagttggcgatattggtgcggttgttttaaatgaaagaaaacaattggcaacagat
ggagctgttataattggtgctaatgttaataataaaaccaaagaattaatatcattaatt
gatattcaaatgcgtggagttatttatataacagaagaaaatgcaatctttaaattaatg
caaaaacaaattattgatatcttagagaaatacaaaaatgaagcaacttcaaatccaaat
gcatatgatttaaatgttattaaaaaagaaattgtttctagaattagaactactttaaaa
caagaaacaggaaaacaacctattgttttagttataattaatgaacttgatggatcattt
tttgaaccaaaatctaataaaataaaaaactcatag

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