Spiroplasma floricola: SFLOR_v1c02760
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Entry
SFLOR_v1c02760 CDS
T05283
Symbol
rnj
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
sfz
Spiroplasma floricola
Pathway
sfz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SFLOR_v1c02760 (rnj)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfz03019
]
SFLOR_v1c02760 (rnj)
Messenger RNA biogenesis [BR:
sfz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SFLOR_v1c02760 (rnj)
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RNase_J_b_CASP
RMMBL
DUF7088
DnaD_N
Motif
Other DBs
NCBI-ProteinID:
AUB31333
UniProt:
A0A2K8SD24
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Position
308377..310092
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AA seq
571 aa
AA seq
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MADIKFMALGGQDERGKNIFVISVNDNLYIFDAGIKFPERSVLGIDVIIPNFEYLKANSK
KIKGIFLSNPSSNNSGAISYILREIDVPVYCNELTTTILKYRNMKYRIKNRENNFKIIND
KDIVSFGDVKIEAFRTTAAFPESFGFAIHTEDGVIVYAGDYIIDGNEQSYFSTDMNHLNQ
ISQKGVLAFISDAEYASRIGYTVPNHRIDKFISAPMKDKKRRLILGMFEEDVFKLFEIIK
QAKANERKIAVYGKTITKVVESKVIQESLQISSKDIISIEEFMKSEDGILLLTGAGDLLY
TRLAKIAAGNDDKVEFTENDTIILATPPAAGVEKRHAEILDELARTNAKLVSLSDKNIWS
MRASYEDIKLMTRIMKPKSFIPIKGLYKDFLNAERAAIEAGVDKRNIQLINNGQILKISK
EGKLVIASDSIKTADVYVDGIGVGDIGAVVLNERKQLATDGAVIIGANVNNKTKELISLI
DIQMRGVIYITEENAIFKLMQKQIIDILEKYKNEATSNPNAYDLNVIKKEIVSRIRTTLK
QETGKQPIVLVIINELDGSFFEPKSNKIKNS
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atggcagatataaaatttatggccttaggtggtcaagatgagagaggaaaaaatattttt
gttatcagcgttaatgataacttatatatatttgatgcaggaattaaatttccagagaga
agtgttttaggaatagatgtaattattccaaattttgagtatttaaaagcaaattcaaag
aaaattaaagggatttttctttcaaatccaagttcaaataactcaggagcaattagttat
attttaagagaaatagatgttccagtttattgtaatgaacttacaacaacaattttgaag
tatagaaatatgaaatatagaattaaaaatagagaaaataattttaaaattattaatgac
aaagatatagtttcatttggggatgtaaaaattgaagcgtttagaacaactgcagcattt
ccagaatcttttggatttgcaattcatacagaagatggagttatagtttatgcaggagat
tacattattgatggaaatgagcaatcatatttttcaacagatatgaatcatttaaatcaa
atatctcaaaaaggagttttagcttttataagtgatgcagagtatgcttcaagaattggc
tatactgttccaaatcacagaattgataaatttatttcagcaccaatgaaagataaaaaa
agacgtctaattttaggtatgtttgaagaagacgtatttaaactatttgaaataataaaa
caagcaaaagcaaatgaaagaaaaattgctgtttatggaaaaacaattacaaaagtagtt
gaatcaaaagtaattcaagagagtttacaaatttcttcaaaagatattataagtattgaa
gagtttatgaaatcagaagatggaattttgcttttaacaggagcaggagatcttttatat
acaagacttgctaaaattgcagctggaaatgatgataaagttgagtttacagaaaatgat
acaattattttagcaactcctccagcagctggagttgaaaaaagacatgcagaaatttta
gatgaattggcaagaacaaatgctaagttagtatcattgagtgataaaaatatttgatcg
atgagagcaagttatgaagatattaaattaatgacaagaataatgaaaccaaaatcattt
attcctattaaaggtttatataaagattttttaaatgcagaaagagcagctattgaagca
ggagtagacaaaagaaatattcaattaattaataatgggcaaattttaaaaatatctaaa
gaaggtaaattagtaatcgcatctgattcaatcaaaacagcagatgtttatgtagatgga
attggagttggcgatattggtgcggttgttttaaatgaaagaaaacaattggcaacagat
ggagctgttataattggtgctaatgttaataataaaaccaaagaattaatatcattaatt
gatattcaaatgcgtggagttatttatataacagaagaaaatgcaatctttaaattaatg
caaaaacaaattattgatatcttagagaaatacaaaaatgaagcaacttcaaatccaaat
gcatatgatttaaatgttattaaaaaagaaattgtttctagaattagaactactttaaaa
caagaaacaggaaaacaacctattgttttagttataattaatgaacttgatggatcattt
tttgaaccaaaatctaataaaataaaaaactcatag
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