Streptococcus gallolyticus UCN34: GALLO_0007
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Entry
GALLO_0007 CDS
T01171
Symbol
mfd
Name
(GenBank) Transcription repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sga
Streptococcus gallolyticus UCN34
Pathway
sga03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sga00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GALLO_0007 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sga03400
]
GALLO_0007 (mfd)
Enzymes [BR:
sga01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GALLO_0007 (mfd)
DNA repair and recombination proteins [BR:
sga03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GALLO_0007 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
UB2H
AAA_22
AAA_16
RecG_dom3_C
Saccharop_dh_N
adh_short
Motif
Other DBs
NCBI-ProteinID:
CBI12499
UniProt:
A0AA36JWC8
LinkDB
All DBs
Position
5941..9441
Genome browser
AA seq
1166 aa
AA seq
DB search
MNIIDLFSQNKLIQTWHSGVANLGRQLIMGLSGSSRALAIASAYQANEEKIVVITSTQNE
VEKLASDLSSLIGEDKVYTFFADDVAAAEFIFASMDKAHSRLEALNFLQDNKQSGILITS
LVGARVLLPNPEIYAESQLNFVVGEDYNLDKVVKVLSNVGYQKVSQVLNPGEFSRRGDIV
DIYEMTADYPYRLEFFGDEVDGIRQFDAETQKSLSNIEQVTISPADELILSEEDFARASK
AFETFLETAKDEQQQAYLSELYAATQEQYKHQDIRRFLSLFYAKEWTLLDYIPKGTPVFF
DDFQKLVDRNAKFDLEVANLLTEDLQRGKAVSSLVYFADIYKDLRQYQPATFFSNFHKGL
GNLKFDKLHNFTQYPMQEFFNQFPLLIDEVNRYQKSKATVLIQADSQHGLERLQENLHEY
GLELPVVAADDLQAQQAQLVVGNLSNGFYFADEKIVLITEHEIYHKKIKRRIRRSNISNA
ERLKDYNELSKGDYVVHHVHGIGKFLGIETIEIHGVHRDYLTIQYQGSSTISLPVEQIES
LSKYVSADGKEPKINKLNDGRFQKTKQKVSKQVEDIADDLLKLYAERSQLKGFAFSPDDD
LQREFDEDFAFVETEDQLRSIKEIKHDMEEDKPMDRLLVGDVGFGKTEVAMRAAFKAVKD
HKQVAVLVPTTVLAQQHYTNFSERFENYPVTVDVLSRFRSKKEQNDTLDKLKKGQVDIII
GTHRLLSKDVDFADLGLIIIDEEQRFGVKHKEKLKELKTKVDVLTLTATPIPRTLHMSML
GIRDLSVIETPPTNRYPVQTYVLETNPGLIREAIIREIDRGGQVFYVYNRVDTIDQKVSE
LQELVPEASIGFVHGQMSEIQLENTLMDFIDGVYDVLVATTIIETGVDISNVNTLFIENA
DHMGLSTLYQLRGRVGRSNRIAYAYLMYRPDKILTEVSEKRLDAIKGFTELGSGFKIAMR
DLSIRGAGNILGASQSGFIDSVGFEMYSQLLEEAIAKKQGKFQARRKSNAEMNLQIDAYL
PSEYIDDERQKIEIYKRIREIESQKDYQSLQDELIDRFGEYPDQVAYLLEIGLVKAYMDN
AFTELVERKDNNLLVRFEKASLQHYLTQDYFEALSKTNLKARIGENQGKIEITFNIRDKK
DYEILEELQNFGKMLAEIKSRKIEKD
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgaatattattgatttatttagccaaaataagctcattcaaacatggcatagcggcgtg
gctaatcttggtaggcaactgattatgggcttatcaggttctagtagagctcttgccatt
gcttctgcttatcaggctaatgaggaaaaaatagttgtcatcacctcaacacaaaatgaa
gttgaaaaattggctagtgatttatctagcttgattggtgaggacaaggtttatactttt
tttgcggatgatgttgcggcggcagagtttatttttgcctcgatggataaggcacactca
cgcctagaagctttaaattttttacaagataataagcaatctggtatcttaattacaagt
ttagtgggagcacgtgttttactaccaaatcccgaaatttatgctgaaagtcagctaaat
tttgttgtcggtgaggattacaaccttgacaaggttgtaaaggtactgtcaaatgtcggt
taccaaaaagtatcacaggttcttaatccaggcgaatttagtcggcgtggtgatatcgtt
gatatttatgagatgacagctgactatccttatcgtttagagttctttggtgatgaagtt
gatggcattcgtcagtttgatgcagaaacacaaaaatcacttagtaatattgagcaggta
accatttccccagctgatgagctcattttatcggaagaagattttgctagagctagtaag
gcatttgagacgtttttagagactgctaaagatgaacaacagcaagcttatttaagtgag
ctttatgctgcaactcaggaacagtataagcatcaagacattagacgtttcttatcactc
ttttatgcaaaagagtggacgttacttgattacattcctaagggaaccccagtctttttt
gatgattttcaaaagctagttgaccgcaatgctaagtttgatttggaagttgcaaactta
ttgacagaagatttacaacgtggtaaagcagtgtcaagcttggtttactttgctgatatt
tataaagacttacgtcaatatcagccagcaacgttcttttctaattttcataaaggattg
ggtaatcttaaatttgataaacttcataattttacacaatatccaatgcaagaatttttc
aatcaatttccgttattgattgatgaagttaatcgttatcaaaaatctaaagcgaccgtt
ttaattcaagcagattcgcagcatggcttagaacgtttacaggagaatttacatgaatat
ggtttggaattacctgtggttgctgcagatgatttacaagcacaacaagctcagctagtt
gttggaaatttatcaaatggcttttattttgctgatgagaaaattgttctcattaccgag
catgaaatttatcataagaaaattaagcgccgtattcgtcgttcaaatattagcaatgcc
gaacgtttgaaagactacaatgaattgtcaaaaggtgattatgtggttcaccatgttcat
ggtattggtaaatttttaggaattgaaacaattgaaatccatggtgtgcaccgcgattat
ttgaccattcaatatcaaggttcttcaacaatttcattgccagtagagcaaattgaaagt
ttatcaaaatacgtttctgcagatggcaaggaacctaaaatcaataaattaaatgatggt
cgtttccaaaagaccaaacaaaaggtttctaagcaagttgaagacattgcggatgatttg
ttgaaattgtatgcggaacgtagtcagctaaaaggatttgctttttcaccagacgatgat
ttgcagcgggaatttgacgaagattttgcttttgtagaaacagaggaccagcttcgctct
atcaaggaaattaagcacgacatggaagaagataagccaatggatcgcttattggttggg
gatgttggctttggtaaaacagaagttgcgatgcgcgccgcttttaaagctgttaaagac
cataaacaagtagctgtcttagtgccaacaactgttcttgctcaacaacactacacaaat
ttctcagagcgttttgaaaattatcctgttacagttgatgtgcttagtcgttttcgtagc
aaaaaagaacaaaatgacaccctagacaagttgaaaaaaggtcaagttgatattattatt
ggtactcatcgtctgctatctaaagatgttgattttgctgatttaggtttgattattatt
gatgaggagcaacgttttggcgttaagcacaaagaaaaattaaaagagcttaagactaaa
gttgatgtattgaccttgacagcgactccaattccacgaacccttcacatgtcaatgttg
ggaattcgcgacctgtcagttattgaaacgccaccgactaaccgttaccctgttcaaact
tacgttttggaaactaatcctggtctgattcgtgaggctatcattcgtgaaattgaccgt
ggcggacaagttttctacgtttacaatagggttgacactattgaccaaaaagtgtcagaa
ttgcaagagttggttcctgaagcaagcattggttttgttcatggtcagatgagtgaaatt
caacttgaaaatacgctcatggactttattgacggtgtttacgatgttctggttgcgaca
actatcattgaaacaggcgttgatatttctaatgttaatactttatttatcgaaaatgca
gaccacatgggcttgtcaactttgtatcaacttcgtggacgtgttgggcgttctaatcga
attgcttacgcctacctcatgtaccgcccagacaagattttgacagaggtctctgaaaaa
cgtttagatgctattaaaggctttacagaattaggttctggtttcaaaattgccatgcgt
gatttatccattcgtggtgcaggaaatattcttggcgcctcacaaagtggttttattgac
tctgttggttttgaaatgtattcacagttactagaagaggctatcgctaagaaacaaggc
aaatttcaagcgcgccgtaagagcaatgcggagatgaatttacaaatcgatgcttattta
ccaagcgaatatattgacgatgaacgtcaaaaaattgaaatttataaacgtattcgtgaa
attgaaagccagaaagattatcaaagtttacaagatgagttaattgaccgttttggcgag
taccctgaccaagtcgcctacttacttgaaattggcttggttaaagcttatatggacaat
gctttcacagaacttgtggaacgtaaagataacaatctattagtacgttttgaaaaagct
tcgctgcaacattacttgacacaagattattttgaagctctttcaaaaacaaacttgaaa
gcccgtattggcgaaaatcaaggtaaaattgaaattacttttaatatccgtgataaaaaa
gattatgagattttagaagaacttcagaatttcggtaaaatgctagctgaaatcaaatcc
agaaaaattgaaaaggactag
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