Streptococcus gallolyticus UCN34: GALLO_0085
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Entry
GALLO_0085 CDS
T01171
Symbol
rpoC
Name
(GenBank) RNA polymerase (beta' subunit)
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sga
Streptococcus gallolyticus UCN34
Pathway
sga03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sga00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GALLO_0085 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sga03021
]
GALLO_0085 (rpoC)
03400 DNA repair and recombination proteins [BR:
sga03400
]
GALLO_0085 (rpoC)
Enzymes [BR:
sga01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GALLO_0085 (rpoC)
Transcription machinery [BR:
sga03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GALLO_0085 (rpoC)
DNA repair and recombination proteins [BR:
sga03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GALLO_0085 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_3
RNA_pol_Rpb1_2
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
CBI12577
UniProt:
A0AA36NNM2
LinkDB
All DBs
Position
96685..100323
Genome browser
AA seq
1212 aa
AA seq
DB search
MVDVNRFKSMQITLASPSKVRSWSYGEVKKPETINYRTLKPEREGLFDEVIFGPTKDWEC
ACGKYKRIRYKGIVCDRCGVEVTRAKVRRERMGHIELKAPVSHIWYFKGIPSRMGLTLDM
SPRALEEVIYFAAYVVIDPKDTPLEPKSLLTEREYREKLQEYGQGSFVAKMGAEAIQDLL
KRVDLKSEIAELKEELKTATGQKRIKAVRRLDVLDAFYKSGNKPEWMVLNILPVIPPDLR
PMVQLDGGRFAASDLNDLYRRVINRNNRLARLLELNAPGIIVQNEKRMLQEAVDALIDNG
RRGRPITGPGSRPLKSLSHMLKGKQGRFRQNLLGKRVDFSGRSVIAVGPTLKMYQCGVPR
EMAIELFKPFVMREIVARDYAGNVKAAKRMVERGDERIWDILEEVIKEHPVLLNRAPTLH
RLGIQAFEPVLIDGKALRLHPLVCEAYNADFDGDQMAIHVPLSEEAQAEARLLMLAAEHI
LNPKDGKPVVTPSQDMVLGNYYLTMEEPGREGEGMIFKDRDEAVMAYRNGYVHLHTRVGI
AVDSMPNKPWTDEQKHKILVTTVGKILFNDIMPEDLPYLQEPNNANLTEKTPDKYFLAPG
QDIQSAIDSLEINVPFKKKNLGNIIAEIFKRFRTTETSAFLDRLKDLGYYHSTLAGLTVG
IADIPVIDNKQEIIDAAHSKVEQINKAFRRGLMTDDDRYVAVTTTWREAKEELEQRLIET
QDPKNPIVMMMDSGARGNISNFSQLAGMRGLMAAPNGRIMELPILSNFREGLSVLEMFFS
THGARKGMTDTALKTADSGYLTRRLVDVAQDVIIREDDCGTDRGLVIRAITDGKEVTETL
EERLVGRYTKKSVKHPETGEVIVGPDVLITEDMAAEIVKAGVEEVTIRSVFTCNTRHGVC
RHCYGVNLATGDAVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVASNTDITQGLPRIQE
IFEARNPKGEAVITEVKGTVVDIEEDASTRTKKVYVQGKTGMGEYVVPFTARMKVAVGDE
VHRGAPLTEGSIQPKRLLEVRDTLSVETYLLAEVQKVYRSQGVEIGDKHVEVMVRQMLRK
VRIMDPGDTELLPGTLMDIADFTDANKDVVISGGIPATSRPVLMGITKASLETNSFLSAA
SFQETTRVLTDAAIRGKKDHLLGLKENVIIGKIIPAGTGMARYRNLEPQAVNELETSEEA
ETVEATVSTDAE
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
gtggttgacgtaaatcgttttaaaagtatgcaaatcacattagcctcaccaagtaaagtc
cgttcatggtcttatggtgaagttaaaaaacctgaaacaatcaactatcgtacgctcaaa
ccagaacgtgaaggtctttttgatgaagtaatctttggaccaacaaaagactgggaatgt
gcttgtggtaaatataaacgtattcgttataaaggaattgtttgtgaccgctgtggtgtt
gaagtaacacgtgctaaagttcgtcgtgaacgcatgggacacatcgaattgaaagctcca
gtatcacacatctggtacttcaaaggtattccatcacgcatgggacttactcttgacatg
agtccacgtgctcttgaagaagttatttacttcgctgcttacgtagttatcgatccaaaa
gatactccgcttgaaccaaaatcacttttgactgagcgtgaatatcgtgaaaaattacaa
gaatacggacaaggatcatttgttgcgaaaatgggtgctgaagctatccaagatcttctt
aaacgcgttgatttgaaatctgaaatcgctgaacttaaggaagaattgaaaacagcaaca
gggcaaaaacgtatcaaagctgtccgtcgtttggacgtgcttgatgccttctacaaatct
ggtaacaaaccagaatggatggtacttaacattttgccagttattccaccagatcttcgt
ccaatggttcaattggatggtggacgtttcgctgcatctgacttgaatgacctttaccgt
cgtgttatcaaccgtaacaaccgtttggctcgtttgcttgaattgaatgccccaggtatc
attgtgcaaaatgaaaaacgtatgttgcaagaagctgttgatgcccttatcgataacggt
cgtcgtggtcgtccaatcactggtcctggtagccgtcctcttaaatctttgagccacatg
cttaaaggtaaacaaggtcgtttccgtcaaaacttgcttggtaaacgtgttgacttctct
ggacgttcagttatcgccgtaggtccaacacttaaaatgtatcaatgtggtgtgccacgt
gaaatggctatcgaattgttcaaaccattcgtaatgcgtgaaatcgttgcgcgtgactat
gctggtaacgttaaagcagctaaacgtatggttgaacgtggtgatgaacgtatttgggat
attcttgaagaagttatcaaagaacacccagtgcttcttaaccgcgcaccgactcttcac
cgtttgggtatccaagccttcgaaccagtccttattgatggtaaagcacttcgtcttcac
ccacttgtttgtgaagcctacaatgccgacttcgatggtgaccaaatggccatccacgta
ccactttctgaagaagcacaagctgaagcacgtcttcttatgcttgccgcagaacacatc
cttaaccctaaagatggtaaaccagtcgtaacaccatctcaagatatggttcttggtaac
tactaccttactatggaagaaccaggtcgtgaaggtgaaggaatgatcttcaaggaccgt
gatgaagcagttatggcttaccgcaatggttatgttcacttgcatactcgtgtgggtatt
gccgttgatagcatgccaaataaaccatggactgacgaacagaaacataaaatcctggtt
acaactgtaggtaagattctcttcaacgatatcatgcctgaggatttaccttaccttcaa
gagccaaacaatgctaatctaacagaaaaaactccagataagtacttcttggcaccagga
caagatattcaatctgctattgacagcttggaaatcaatgtaccatttaagaagaaaaat
cttggaaatatcattgcggaaatctttaaacgtttccgtacaacagaaacatcagctttc
cttgaccgcttgaaagaccttggttactatcattcaactcttgctggtttgacagtgggt
atcgccgatatcccagttatcgataacaaacaagaaattatcgatgcagctcacagcaaa
gttgaacaaatcaacaaagccttccgtcgtggtttgatgactgatgatgaccgttatgtt
gctgttacaacaacatggcgtgaagctaaagaagaacttgaacaacgtctgattgaaaca
caagatcctaagaatcctatcgttatgatgatggactcaggagctcgtggtaacatttct
aacttctcacaacttgccggtatgcgtggtttgatggctgctccgaacggacgtatcatg
gaattgcctatcctatctaacttccgtgaaggtttgtctgtcttggaaatgttcttctct
actcacggtgctcgtaaaggtatgaccgatacagcccttaagactgccgactctggttac
cttactcgtcgtttggttgacgttgcccaagacgttatcattcgtgaagacgattgtgga
actgaccgtggtcttgttattcgtgctattactgatggtaaagaagtaacagaaactctt
gaagaacgtcttgttggtcgttacactaagaaatctgttaaacatcctgaaactggcgaa
gttatcgttggtccagatgtattgattactgaagatatggcagctgaaattgttaaagct
ggtgttgaagaagttacaatccgttcagtatttacatgtaacactcgtcatggtgtctgc
cgtcactgttatggtgtcaaccttgcaacaggtgatgcggttgaagttggtgaagcagtt
ggtacaattgccgctcaatctatcggtgaacctggtacacagcttacaatgcgtaccttc
cacacgggtggtgttgcgtcaaataccgatatcacacaaggtcttcctcgtatccaagaa
atctttgaagctcgtaatcctaaaggggaagccgttatcactgaagttaaaggtactgtt
gttgacatcgaagaagatgcttctacacgtactaagaaagtttacgttcaaggtaaaact
ggtatgggtgaatacgtggtaccattcactgcccgcatgaaagttgctgttggtgatgag
gtacaccgtggtgctccacttactgaaggttctatccaacctaaacgtctccttgaagtt
cgtgacacattatcagttgaaacttaccttcttgctgaagtacaaaaagtttaccgtagc
caaggggtagaaatcggtgataaacacgtcgaagtaatggttcgccaaatgcttcgcaaa
gttcgtatcatggatccaggtgatacagaacttctcccaggcacacttatggatattgca
gactttacggatgctaacaaagatgttgttatctctggtggtatccctgcaacatcacgt
ccagtgcttatggggattacaaaagcttcgcttgaaactaactcattcttgtcagccgca
tcattccaagaaacaactcgtgttcttacagatgctgctatccgtggtaagaaagatcat
cttcttggtcttaaagaaaatgttatcatcggtaaaatcattccagctggtacaggtatg
gctcgttaccgcaaccttgaaccacaagctgttaatgaacttgaaacaagtgaagaagca
gaaacagttgaagcaactgtttcaacagatgctgaataa
DBGET
integrated database retrieval system
