Staphylococcus gallinarum: K3U27_13465
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Entry
K3U27_13465 CDS
T10418
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sgai Staphylococcus gallinarum
Pathway
sgai03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sgai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
K3U27_13465 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sgai03400
]
K3U27_13465 (mfd)
Enzymes [BR:
sgai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K3U27_13465 (mfd)
DNA repair and recombination proteins [BR:
sgai03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
K3U27_13465 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Cas3-like_C_2
Glyco_hydro_115
RecG_dom3_C
UB2H
IstB_IS21
AAA_22
DUF1421
Motif
Other DBs
NCBI-ProteinID:
UEH00695
LinkDB
All DBs
Position
complement(2807031..2810546)
Genome browser
AA seq
1171 aa
AA seq
DB search
MKSIITEYINEDKRYQELNEVFGKENVLVTGLSSAAKATIISEKYLNSSKQLLVVTNNLY
QADKLENDLLQFVDAEHIYKYPLQDIMTEEFSTQSPQFMSERVRTLTALAQEKRGLFIVP
LNGLKKWLTPVDMWQAHQMSLSVGDDIDIDALLNKLVNMGYRRESVVSHIGEFSLRGGII
DIYPLIGDPVRIELFDTEIDSIRDFDVETQRSESNLESVEITTASDYIITDEVISHTKQK
LKEAYEMTRPKIDKAVRNDLKETYESFKLFEDSLFDHQVLRRLVAFMYESPATIMDYFKS
DAIIAVDEFNRVKETETTLTTEVDEFIQNLIESGKGFIGQTFLAYDGFETLLKRHPVTYF
TLFTATMSVPIQSIIKFSCKPVQQFYGQYDIMRSEFQRYIKNDYTVVVLAETEVKKERIQ
SMLNEMHIPTFVDTVSDNHQTGSAIITEGSLSEGFELPYMQLVVVTERELFKSKQKKKPK
QQKTLTNAEKIKSYQDLKVGDYIVHVHHGVGRYLGVETLEVAGVHKDYIKLQYKGTDQLF
VPVDQMDQVQKYVASEDKSPKLNKLGGTEWKKTKAKVQQSVEDIADELIELYKEREMSVG
YKYGPDTAEQNDFELDFPYELTPDQSKSIDEIKGDMEVEKPMDRLLCGDVGYGKTEVAVR
AAFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFPVEIQLISRFRTTKEIKETKEGLK
SGFVDIVVGTHKLLGKDIHYKDLGLLIVDEEQRFGVRHKERIKTLKTNVDVLTLTATPIP
RTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNANFIKEALEREVSREGQVFYLYNKVQ
SIYEKREQLQMLMPDANIGVAHGQMSERDLEETMLGFINHEYDILVTTTIIETGVDVPNA
NTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPTNKVLTESAEERLQAIKEFTELG
SGFKIAMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGITEEQADAPEVE
IELNIDAYLPAEYIQNEQAKIEIYKKLRKIETEAQLMDVKDELIDRFNEYPVEVERLLDM
MEIKVHALHAGVTLIKDTGKQVEVYMSEKGTTEINGESLFKHTQPLGRAMKVGVQDGKMK
VTLNKTKTWLENLKFLAKCIEESMEFADEAE
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatcgataattacagaatatataaatgaagacaaacgttatcaagaacttaatgaa
gtgttcggtaaggaaaatgtcctcgttaccggcttatcttcggctgctaaagcaacaatt
atatctgagaaatatttgaatagctctaagcagttattagttgttacaaataacttgtat
caagcagataagttggaaaatgacttgttacaatttgttgatgcagagcatatttataaa
tatccattgcaagatatcatgaccgaagaattctcaacacaaagccctcaatttatgagt
gaacgtgtacgtacattaacggcacttgctcaagaaaagagaggcttatttatcgtacca
ttaaacggattgaaaaaatggttgacgcctgtagatatgtggcaagcacatcaaatgtcg
ctctctgtaggagatgacattgatattgatgcgttattaaataaactagtaaacatgggc
tatcgtagggaaagtgtcgtgtcccatataggagaattctcattacgcggtggtattatc
gatatttatccactgataggtgacccagtaagaatagaactctttgatactgaaatcgat
tcaattcgtgattttgacgttgagacacaacgttcagagtctaatttagaaagtgtagaa
atcacaactgcgagtgactatatcattactgatgaagtgattagtcacacaaagcaaaag
ttaaaagaagcctatgaaatgacaaggcctaaaatagacaaagcagtacgtaatgatttg
aaagaaacatatgaaagtttcaaattatttgaagactcattatttgatcatcaagtctta
cgacgattggttgcgtttatgtatgagtctcctgctacgattatggattacttcaaatct
gatgcaattatagcagttgatgaatttaatagagtcaaagaaacagagacgacattaacg
acagaagtagatgaatttattcaaaatttaattgaaagtggtaaaggatttatcggtcaa
actttcttagcttatgatggttttgaaacattgttgaagcgtcatccagtaacttacttt
acgttatttactgcaacgatgtcagtgccaattcaaagtattattaagttctcgtgtaaa
ccagtgcaacaattttatggtcagtacgatattatgcgttcagaattccagcgttatatc
aaaaatgactatactgtagtggttttagcagaaacagaagtgaaaaaagagcgaattcag
tcaatgctaaatgaaatgcatattccgacttttgtagatactgtgagtgataaccatcaa
acgggaagcgcaatcattacagaaggcagcttgtctgaaggctttgaattaccatatatg
caacttgtcgttgtaacagagcgagaattgtttaaatcaaagcaaaaaaagaaaccgaag
caacagaaaacgttaacgaatgcagaaaaaatcaaatcatatcaagacctaaaggtcggt
gactatattgtccatgtacaccatggtgttggtcgttatttgggtgtagaaacacttgaa
gttgcaggtgttcataaggactatatcaaattgcaatataagggtacggatcaactcttt
gtacctgtagaccaaatggatcaagttcagaaatatgttgcctcagaagataaatcacct
aagttaaataaattaggtggaacagaatggaaaaaaacaaaagccaaagtacaacaaagt
gttgaagatatagctgatgagcttatcgaattatataaagaacgtgaaatgtctgttggt
tataaatacggaccagacacagcagaacaaaatgattttgaattagatttcccttatgag
ttaacacccgatcaaagtaaatcaatcgatgaaattaaaggtgacatggaagttgaaaag
ccaatggatagattactttgtggtgacgtaggttatggtaagacagaagtagcagttcgt
gcagcgtttaaagcagtaatggaaggtaagcaagttgcatttttagtacctacgactatt
ttggcgcagcaacactatgaaacattgatagagcgtatgcaagattttccagtcgaaatt
caattaatcagtagatttagaactacaaaggaaattaaagaaacgaaagagggattgaag
tctggctttgtagatatcgtagtaggtacacataaactactaggtaaggatatccattat
aaagacttaggcttgttaattgtcgatgaggaacagcgctttggcgttagacataaagaa
cgtatcaagacattaaagactaatgtagatgttttaactttaacggcaacgccaattcca
agaaccttacacatgagtatgttaggtgttagagacttatcggtaattgagacaccacct
gaaaatcgcttccctgtgcaaacatatgtcttagaacaaaatgctaactttattaaagaa
gctttagaacgagaggtttctagagaaggacaagtattctatttatacaataaagtgcag
tctatatatgagaaacgcgaacaattacagatgcttatgccggacgctaatattggagtg
gcccatggtcagatgagtgaacgtgatttagaagaaacaatgttaggattcattaatcat
gaatacgacattcttgtgacgacgacgattattgaaacaggcgtagatgtaccaaatgct
aatacattaatcatagaagatgctgatcgctttggattgagccagttatatcaattgaga
ggtagagttggacgttctagtcgtataggttatgcgtactttttacatcctacgaataaa
gttttgacagagtcagcagaagagcgtttgcaagcaattaaagagtttacagaactaggt
tctggtttcaaaattgcaatgcgcgatttaaatattcgaggcgcgggtaatcttctaggt
aaacaacagcacggctttattgattctgtcggctttgacttatactcacaaatgttagaa
gaagcagtaaatgaaaaacgaggaattactgaagaacaagcagatgcaccagaagttgaa
atagaattgaatatcgatgcgtatttaccggcagaatatattcaaaatgaacaagctaag
atagaaatatataagaaattacgtaaaattgagaccgaagcacaattaatggacgttaaa
gacgaattaatagatcgctttaatgaatatccggttgaagtggaacgtttattagatatg
atggaaattaaggttcatgccctacatgctggtgttacattgatcaaggatactggcaag
caagtcgaagtgtatatgtctgaaaagggaacgactgaaatcaatggtgagagcctattt
aaacatacacaaccacttggacgagcgatgaaagtaggtgtccaagatggtaaaatgaag
gtgacactaaataaaactaagacttggctcgaaaatttaaaattcttagctaaatgtatt
gaagaaagtatggaatttgctgatgaagcagaataa
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