Streptomyces globisporus: WQO_10770
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Entry
WQO_10770 CDS
T04209
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sgb
Streptomyces globisporus
Pathway
sgb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sgb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WQO_10770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgb03019
]
WQO_10770
03009 Ribosome biogenesis [BR:
sgb03009
]
WQO_10770
Enzymes [BR:
sgb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
WQO_10770
Messenger RNA biogenesis [BR:
sgb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
WQO_10770
Ribosome biogenesis [BR:
sgb03009
]
Prokaryotic type
rRNA processing factors
WQO_10770
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Motif
Other DBs
NCBI-ProteinID:
ALU93792
UniProt:
A0A0U2SUU3
LinkDB
All DBs
Position
complement(2486398..2490576)
Genome browser
AA seq
1392 aa
AA seq
DB search
MPQPNEPGTTGNNEENTPGDKLPPRRRRRAASRPAGPPGGPVSAAEDVTPAIPAAESAAP
ATDDTPGETAAETAPPARTRRRAVRKVTAPAPVEAETAEPAPVAETPAQPPADEEPAAPA
PRTRRRAVRKATSPAGAPQAAEAPAPVAESPAEPAPEPAAEEETEVAVEIPDEAPAPRRR
RASRKATSPAGAPQSAEAAVVVEPVAAASAVAEPAPAAEPVAEPAAAEPAAPRGRTRRRA
SAPAGAPQSVAPAAEPAAPAAEAEATEEAPAPRTRRRASRKASAPAGAPQAAESVEEPVE
TGESLPAAVAEELAAEADEVEEAAPRGRQRRRATAAGRPEFTARTEEPTRKGRRATRPAV
AVFQAPVFAEPMFQTPETAAAAAAAAGSTSAHDEVDEAEEQQTAEAEQSTAPAEAAPQGG
SRRRRRRRGEAEATEQAAEPAAQDRAPAEQSADEAPEAEADEHEGEDTDEYGDRPSRRRR
RGGRRRRRGEANDTDDEQTTEDAPARAEEPRSEDEQDTGRGQDQEAAEESDEDDDSSASG
SSSSSRRRRRRRRRSGDAAADTDNGSDDPERTVVKVREPRKKEEREPGTGFDEVQSIKGS
TRMEAKKQRRREGREQGRRRVPIITEAEFLARREAVERVMVVRQNGERTQIGVLEDNVLV
EHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFVDIGKGRNAVLYAGEVNFEALGMAHGPR
RIETALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERS
RLKTILKKIVPEDAGVIVRTAAEGASEDELRRDVERLQQQWEDIQKKAKGTSGSNAPTLL
YGEPDMTVRVVRDIFNEDFSKVIVSGDDAWETIHGYVSHVAPDLTERLSRWTSEVDVFAT
YRIDEQLMKALDRKVYLPSGGSLVIDKTEAMVVVDVNTGKFTGQGGNLEETVTRNNLEAA
EEIVRQLRLRDLGGIVVVDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGLVQM
TRKRVGQGLLESFSETCVHCNGRGVIVHMEQPTSAGGGGGGKKSKKRGRGGAGQDHEHDH
AHDHGSDDHASAEPVETETEAELAAEVAAPVAVEPAVRDDDEFYGSPAEAEAAASRRGRR
RASRKASAPAGAPKAEAPAPVVEAPVAEAPVAEVAETPEAAQAPEAQAEAAPQGRTRRRA
TRKATAPAGSPKQAEAAEPVQPAEPSTDPVAVEDPVVEAPAAETPAPAEQAPEAEAPVAA
PPRARRRVTRKVTAPAGSPTGSDDAEIVVVASAPETKASEESAESGATDAGTADSEAAEP
APAKKTARKAAAKKAPAKKAAAKKTAAKKTAAKKTTAKTAAKKATKKTVAAEQSSPSVTV
NAPSADGESSES
NT seq
4179 nt
NT seq
+upstream
nt +downstream
nt
atgcctcagccgaacgaacccggcacgaccgggaacaacgaagagaacacccccggggac
aagctgccgccgcgccgcaggcgccgcgccgcctcccgccccgccggcccgcccggcggc
cccgtgagcgccgccgaggacgtcacgccggccataccggccgccgagtccgccgccccg
gccacggacgacacgcccggcgagacggccgccgagaccgcgccgcccgcccgtacgcgc
cgccgcgccgtgcggaaggtcaccgcccccgcgccggtggaggcggagaccgccgagccc
gctccggtcgccgagacccccgcccagccccccgccgacgaggagcccgccgcaccggcg
ccgcgcacccgccgtcgcgcggtccgcaaggcgacgtccccggccggcgccccgcaggcc
gccgaggcccccgcgccggtcgccgagagcccggccgagcccgctccggaacccgcagcc
gaggaagagaccgaggtcgccgtggagatccccgacgaggccccggcgccccgccgccgt
cgcgcctcccgcaaggccacatcgcccgccggcgccccgcagtccgccgaggccgccgtg
gtcgtcgagcccgtcgccgccgcttccgctgtcgctgagcccgccccggccgccgagccc
gtggccgagcccgctgccgcggagcccgccgccccgcgtggccgtacccgccgtcgtgcc
tccgccccggccggtgcgccgcagtccgtcgcgcccgccgccgagcccgccgcccccgcc
gccgaggccgaggccacggaggaggcgcctgccccgcgcacccgccgccgcgcgtcccgc
aaggcgtccgcgcccgccggcgcgccgcaggccgccgagagcgtcgaggagcccgtcgag
accggcgagagcctgcccgccgccgtcgccgaggagctcgccgccgaggccgacgaggtc
gaggaggccgccccgcgcggacgccagcggcgccgcgccaccgccgccggccgccccgag
ttcacggccaggaccgaggagccgacccgcaagggccgccgcgcgacgcgccccgccgtc
gccgtcttccaggccccggtcttcgccgagccgatgttccagacccccgagaccgcggcg
gccgccgccgctgcggccggttccacctccgcgcacgacgaggtggacgaggccgaggag
cagcagaccgccgaggccgagcagagcaccgcgcccgccgaggccgcgccgcagggcggt
tcgcgccgccgtcgccgccgccgtggcgaggccgaggcgaccgagcaggccgccgagccc
gccgcccaggaccgggcgcccgccgagcagagcgccgacgaggcccccgaggccgaggcg
gacgagcacgagggcgaggacaccgacgagtacggcgaccgcccctcgcgccgtcgtcgt
cgtggtggccgtcgtcgccgtcgtggcgaggccaacgacacggacgacgagcagaccacc
gaggacgcgcccgcccgtgccgaggagccccgctccgaggacgagcaggacaccggccgc
ggccaggaccaggaggccgccgaggagagcgacgaggacgacgactcctcggcctccggt
tcgagcagcagctcccggcgtcgtcgccgtcgccgtcgccgcagcggtgacgccgccgcc
gacaccgacaacggttccgacgacccggagcgtacggtcgtcaaggtccgcgagccgcgc
aagaaggaggagcgcgagccgggcaccggcttcgacgaggtccagtccatcaagggctcg
acccggatggaggccaagaagcagcgccgccgcgagggccgcgagcagggccgccgccgg
gtcccgatcatcaccgaggcggagttcctcgcccgccgcgaggccgtcgagcgcgtgatg
gtcgtccgccagaacggcgagcgcacccagatcggcgtcctcgaggacaacgtgctcgtc
gagcactacgtcaacaaggagcaggccaccagctacgtcggcaacgtctacctgggcaag
gtccagaacgtgctgccgtccatggaggccgccttcgtcgacatcggcaagggccgcaac
gccgtcctgtacgccggtgaggtcaacttcgaggcgctcggcatggcccacgggccgcgc
cgcatcgagaccgcgctcaagtccggccagtcggtcctggtccaggtgaccaaggacccg
atcggccacaagggcgcccgtctcaccagccaggtctcgctgcccggccgctacctggtc
tacgtgcccgagggctcgatgaccgggatcagccgcaagctgcccgacaccgagcgctcc
cgcctcaagaccatcctcaagaagatcgtccccgaggacgcgggcgtcatcgtgcgcacc
gccgccgagggcgcgagcgaggacgagctgcgccgtgacgtcgagcggctccagcagcag
tgggaggacatccagaagaaggcgaagggcaccagcggctccaacgcgccgacgctgctc
tacggcgagccggacatgaccgtccgggtcgtccgcgacatcttcaacgaggacttctcc
aaggtcatcgtcagcggcgacgacgcgtgggagaccatccacgggtacgtctcgcacgtc
gcgcccgacctcaccgagcggctctcccgctggacctccgaggtcgacgtcttcgcgacg
taccgcatcgacgagcagctgatgaaggcgctggaccgcaaggtctacctgcccagcggc
ggttcgctggtgatcgacaagaccgaagcgatggtcgtcgtcgacgtcaacaccggcaag
ttcaccggccagggcggcaacctggaggagaccgtcaccaggaacaacctggaggcggcc
gaggagatcgtgcgccagctgcggctgcgcgacctcggcggcatcgtcgtcgtcgacttc
atcgacatggtgctggagtccaaccgggacctcgtcctgcgacgcctcctggagtgcctg
ggccgcgaccgcaccaagcaccaggtcgccgaggtcacctcgctgggcctggtccagatg
acccgcaagcgggtgggccagggtctgctggagtccttctccgagacctgcgtccactgc
aacgggcgcggcgtcattgtccacatggagcagccgacgtccgccggcggcggtggcggc
ggcaagaagtccaagaagcgcggccgcggcggcgcgggccaggaccacgagcacgaccac
gcccacgaccacggctccgacgaccacgcgtccgccgagcccgtggagacggagacagag
gccgagctggccgccgaggtcgccgcccccgtggccgtggagcccgcggtcagggacgac
gacgagttctacggcagccccgccgaggccgaggcggccgcctcgcgccgtggccgccgc
cgggcctcccgcaaggcgtcggccccggccggcgccccgaaggccgaggcgcccgccccg
gtcgtggaggcgcccgttgccgaggcgccggtcgcggaggtggcggagacccccgaggcc
gcgcaggcccccgaggctcaggccgaggccgcgccccagggccgtacgcgccgtcgggcc
acccgtaaggccaccgccccggcgggttcgccgaagcaggccgaagcggcggagccggtg
cagccggccgagccgagcacggacccggtcgcggtcgaggacccggtcgtcgaggcgccc
gccgccgagaccccggccccggcggagcaggctcccgaggccgaggcccccgtggccgcg
ccgccgcgtgcccgccgccgtgtgacccgtaaggtcaccgctccggccggctcgcccacc
gggtcggacgacgcggagatcgtcgtggtcgcgtcggcgcccgagacgaaggcgtccgag
gaatccgcggagtccggagcaacggacgccggaacggcggattccgaggcggcggagccg
gccccggcgaagaagacggcccgcaaggccgccgccaagaaggccccggcgaagaaggcg
gcggccaagaagaccgctgcgaagaagaccgccgcgaagaagacgacggcgaagacggcc
gcgaagaaggcgacgaagaagaccgtcgccgccgagcagtcgtcgccgtccgtgacggtc
aacgcgccctcggcggacggcgagtcgtcggagagctga
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