Streptomyces globisporus: WQO_16290
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Entry
WQO_16290 CDS
T04209
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
sgb
Streptomyces globisporus
Brite
KEGG Orthology (KO) [BR:
sgb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgb03019
]
WQO_16290
Enzymes [BR:
sgb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
WQO_16290
Messenger RNA biogenesis [BR:
sgb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
WQO_16290
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_19
AAA_22
T2SSE
nSTAND3
NACHT
AAA_16
PhoH
DUF6139
SLFN-g3_helicase
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
ALU94753
UniProt:
A0A0U3KJG3
LinkDB
All DBs
Position
3756319..3760251
Genome browser
AA seq
1310 aa
AA seq
DB search
MSTSFADLQSQLGQLSLRDANRLGRRLEGARRIRKPGARQSVLDEIAAEAGKAAERLAAR
AARLPALSYPEELPVSQKKDEILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGVRGM
IGHTQPRRIAARTVAERVADELKTPLGETVGWKVRFTDQVNPESTYLKLMTDGILLAEIQ
TDRELLAYDTIIIDEAHERSLNIDFLLGYLARLLPRRPDLKVVITSATIDPERFARHFGD
APIVEVSGRTYPVEVRYRPLLEEDSEDSDRDQITAICDAVDELGHEAPGDVLVFLSGERE
IRDTADALNKRNLRHTEVLPLYARLSHAEQHRVFQRHTGRRIVLATNVAETSLTVPGIKY
VIDPGNARISRYSHRTKVQRLPIERISQASANQRKGRCGRTSDGICIRLYSEDDFVTRPE
FTDPEILRTNLASVILQMTAAGLGDIEKFPFIDPPDHRNIRDGVQLLQELGALDPAEKDP
KKRLTPLGRKLSQLPVDPRLARMVIEADKNGCAREVMVIAAALSIQDPRERPAEKQTQAD
QNHARFKDETSDFLAFLNLWAYVREQQKERGSSSFRRMCKQEYLNFLRIREWQDIYAQLR
TVAKQMGITVEEPKAEASIPEQAVHTSLLAGLLSHIGLKDTEKNEYLGARSAKFAIFPGS
ALFKKQPRFLMSAELVETSRLWARVNAKVEPEWIEPLAGHLLKRTYSEPHWEKDQAAVMA
YERVTLYGVPIVAQRKVNFGRIDQEASRDLFIRNALVEGDWRTHHQFFHDNRKLLGEVEE
LEHRARRRDILVDDETLFDFYDQRIPEHIVSGAHFDSWWKHKKREEPDALDFERSMLINE
KAGAVTKDDYPDSWRQGKLKFKVTYQFEPGADADGVTVHVPLQVLNQVTAEGFDWQIPGL
REEVVTELIRSLPKPIRRHYVPAPNYADKFLDRAVPLQEPLPQTLARELQRMVGVPVTAD
DFDLSRVPDHLKITFRIVDERRRKVAEDKDLEALKLQLRPKARQALSKAAAATAGPSGES
IERSGLTDWTIGTLNKVFETRRAGQPVKAYPALVDQGETVAVRLFDTEAEQQQAMWRGTR
KLIMLNIPVNPAKFASDRLSNQQKLALSRNPHGSVQDLFEDCATAAADRLIAAHGGPAWD
EKAFRTLYDKVRADLVDLTVRTIDQVQQILAAWQACERRLKSTNSLALVANVTDVREQLA
RLVPPGFVTATGLRRLPDLMRYLVAADRRLQQMPTAVQRDTTRMEKVHEMQDEYAWLLEQ
FPQGRPVPQEALDVRWMIEELRVSYFAHALGTAFPVSDKRIVKAIDALAP
NT seq
3933 nt
NT seq
+upstream
nt +downstream
nt
atgtctacttccttcgccgatctccagtcccagctcggtcagctctcgctccgcgacgcg
aaccggctcggccggcgcctcgaaggagcgcgccgcatccgcaagccgggggcccgccag
tccgtgctggacgagatcgcggccgaggcgggcaaggcggccgaacggctcgcggcgcgc
gcggcccggctgcccgccctgtcgtacccggaagagctgccggtcagccagaagaaggac
gagatcctggaggcgatacgcgaccaccaggtcgtgatcgtcgcgggggagaccgggtcc
gggaagaccacgcagctcccgaagatctgtatggagctggggcgcggtgtccggggcatg
atcgggcacacccagccccgccggatcgccgcccgtacggtcgcggagcgcgtcgcggac
gagctgaagacgccgctgggcgagacggtcggctggaaggtccgcttcaccgatcaggtg
aacccggagtcgacgtatctgaagctgatgacggacggcatcctgctcgccgagatccag
acggaccgcgagctgctggcgtacgacacgatcatcatcgacgaggcccacgagcggtcc
ctcaacatcgacttcctgctcggctatctggcccggctgctgccccgccgccccgatctg
aaggtcgtcatcacctcggcgacgatcgaccccgagcggttcgcgcgccacttcggggac
gccccgatcgtggaggtcagcgggcggacgtatcccgtcgaggtccgctaccggccgttg
ctcgaagaggacagcgaggactccgaccgggaccagatcaccgccatctgcgacgccgtc
gacgagctgggccacgaggcccccggcgacgtcctggtcttcctctccggtgagcgcgag
atccgggacacggcggacgcgctgaacaagcgcaacctcagacataccgaggtgctcccc
ctctacgcgcgtctctcgcacgccgagcagcaccgcgtcttccagcgccacaccggacgc
cgcatcgtcctggcgaccaacgtcgccgagacctcgctgaccgtccccggcatcaagtac
gtgatcgacccgggtaacgcccgcatctcccgctacagccaccgcaccaaggtccagcgg
ctgccgatcgagcggatctcccaggccagcgccaaccagcgcaagggccgctgcggccgt
acctcggacggcatctgcatccggctgtactcggaggacgacttcgtcacccggccggag
ttcaccgatcccgagatcctgcggaccaacctggcctccgtcatcctccagatgaccgcc
gccgggctcggcgacatcgagaagttccccttcatcgacccgccggaccaccgcaacatc
cgcgacggcgtccagctcctccaggagctgggtgcgctcgacccggcggagaaggacccg
aagaagcggctgaccccgctcggccgcaagctctcccagctgcccgtcgacccgcgcctg
gcccgcatggtcatcgaggccgacaagaacggctgcgcccgcgaggtcatggtcatcgcc
gccgcgctctccatccaggacccgcgcgagcggcccgccgagaagcagacgcaggccgac
cagaaccacgcccggttcaaggacgagacctccgacttcctggccttcctcaatctctgg
gcctatgtccgcgagcagcagaaggagcgcggctcgtcctcgttccgccggatgtgcaag
caggagtatctgaacttcctgcgcatccgcgaatggcaggacatctacgcgcagctgcgg
acggtcgccaagcagatgggcatcaccgtcgaggagcccaaggcggaggcgtccatcccc
gagcaggcggtgcacacctcgctgctggccgggctgctgtcgcacatcgggctgaaggac
accgagaagaacgagtatctgggcgcgcgcagcgccaagttcgcgatcttccccggctcg
gcgctgttcaagaagcagccccggttcctgatgtcggcggagctggtggagacctcccgg
ctctgggcgcgggtcaacgccaaggtcgagcccgagtggatcgagccgctggccgggcac
ctgctgaagcggacctacagcgagccgcactgggagaaggaccaggcggcggtgatggcg
tacgagcgggtgacgctctacggcgtgccgatcgtcgcccagcgcaaggtcaatttcgga
cgaatcgaccaggaggcctcgcgggatctgttcatccgcaacgccctggtcgagggcgac
tggcgcacccaccaccagttcttccacgacaaccgcaaactgctcggcgaggtcgaggag
ttggagcaccgggcccgtcgccgcgacatcctcgtggacgacgagaccctgttcgacttc
tacgaccagcggattcccgagcacatcgtgtccggggcgcacttcgactcctggtggaag
cacaagaagcgcgaggagccggacgcgctcgacttcgagcgctccatgctcatcaacgag
aaggccggggccgtcaccaaggacgactacccggactcctggcggcaggggaagctcaag
ttcaaggtgacgtaccagttcgagcccggcgcggacgcggacggtgtgaccgtgcacgtg
ccgctccaggtgctcaaccaggtcaccgccgagggcttcgactggcagatcccggggctg
cgcgaggaggtcgtcaccgagctgatccgctcgctgccgaagccgatccgccggcactac
gtccccgccccgaactacgcggacaagttcctggaccgggccgtcccgctccaggagccg
ctgccgcagaccctggcgcgcgagctccagcggatggtcggcgtcccggtcacggcggac
gacttcgacctctcccgggtcccggaccacctcaagatcacgttccggatcgtcgacgag
cggcggcggaaggtcgccgaggacaaggacctggaggcgctgaagctccagctgcgcccg
aaggcccgccaggcgctctccaaggccgccgcggcgaccgcggggccctcgggcgagtcc
atcgagcgctcgggcctcacggactggacgatcggcacgctgaacaaggtcttcgagacc
cgtcgggccggtcagccggtgaaggcgtatccggccctcgtcgaccagggcgagaccgtg
gcggtacggctcttcgacaccgaggccgagcagcagcaggcgatgtggcgcggcacccgg
aagctgatcatgctgaacatcccggtgaacccggcgaagttcgcgtcggaccggctgagc
aatcagcagaagctggcgctctcccgcaacccgcacggctcggtgcaggacctcttcgag
gactgcgcgaccgccgcggccgaccggctgatcgccgcgcacggcgggcccgcgtgggac
gagaaggcgttccggacgctgtacgacaaggtgcgcgcggacctggtggacctcaccgtc
cgcacgatcgaccaggtgcagcagatcctggccgcgtggcaggcctgcgagcgccggctg
aagtcgacgaacagcctggcgctggtggccaacgtcaccgacgtacgggagcagctggcc
cgtctcgtaccgcccggtttcgttacggccaccgggctgcgccggctgccggacctgatg
cgctacctcgtggcggccgaccggcggctccagcagatgccgacggccgtccagcgggac
accacgcggatggagaaggtccacgagatgcaggacgagtacgcgtggctgctcgaacag
ttcccgcagggcaggccggtgccgcaggaggcgctggacgtccgctggatgatcgaggag
ctgcgggtcagctacttcgcccacgcgctggggaccgcgttccccgtctcggacaagcgg
atcgtgaaggcgatcgacgccctcgcgccctga
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