Selenobaculum gibii: P3F81_09355
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Entry
P3F81_09355 CDS
T09332
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sgbi
Selenobaculum gibii
Pathway
sgbi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sgbi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
P3F81_09355 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sgbi03021
]
P3F81_09355 (rpoC)
03400 DNA repair and recombination proteins [BR:
sgbi03400
]
P3F81_09355 (rpoC)
Enzymes [BR:
sgbi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
P3F81_09355 (rpoC)
Transcription machinery [BR:
sgbi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
P3F81_09355 (rpoC)
DNA repair and recombination proteins [BR:
sgbi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
P3F81_09355 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Cas_Cas2CT1978
Motif
Other DBs
NCBI-ProteinID:
WIW70104
UniProt:
A0A9Y2AFY1
LinkDB
All DBs
Position
complement(1938843..1942802)
Genome browser
AA seq
1319 aa
AA seq
DB search
MLDVNNFDSMRIGLASPEKIREWSHGEVKKPETINYRTLKPEREGLFCEKIFGPTRDWEC
HCGKYKRIRYKGIICDRCGVEVTRSKVRRDRMGHIELAAPVSHIWYFKGIPSRMGLILDI
SPRSLEKVLYFASYIVLDPADTPLIKKQLLTENEYRENRDKYGAAFKVGMGAESIKKLLA
ELDLEKMSKELRQELKEVSGQRKIRAIRRLEVVEAFRKSGNKPEWMIMDVVPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVRNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKLHQCGLPKE
MALELFKPFVMKKLVNAGHAHNIKSAKRMVERIRPEVWDVLEEVIKEHPVLLNRAPTLHR
LGIQAFEPVLTEGRALKLHPLVCTAYNADFDGDQMAIHLPLSAEAQAEARILMLSAHNIL
STKDGRPVAVPTQDMVLGAYYLTIVKPGALGEGKVMTGINEALLAYQHKELSLQAQIKVR
VEGYGMVNTTLGRMIFNESLPPEIRYYYKDDNEEWCLGILMDKKNLGKLVGNCYRNFGNA
KTAEVIDRVKNLGYSYACRAGMTVAIADIKIPKEKKEILANTEAQVNSIERQYRRGLITD
DERYNKVISLWTKATDDVTKAMMDNLDRFNPIYMMANSGARGNIQQMRQLAGMRGLMADP
SGKIIDLPIKANFREGLTVLEYFISTHGARKGLADTALRTADSGYLTRRLVDVAQDVIVR
EDDCDIVGINLVRERAKLANSTSGAIEFLKDSLLGRLLAAEVTDPKTGEVIIPIETVLDE
EKLKLIAEHSIPEIVVRGTSYEGDISNATTTETITLGAPEEHVRETIKKSMIREMLGKNT
TSAVFDQNENEIVPANVPLTEDHIEAILASDAKEVRVRNNNIRGIEVQAIMEGAAVIEHL
KDRIAGRVLAEDIVEPETGEVIAAINQAVDEDLAERICKVRKKVKIRSVLTCKSQFGVCI
KCYGRNLATGHQVDVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRVEELF
EARKPKRQSIIAEIDGRAEVKDTKGMRKVTIFPETGEERVYQIPYGARIIAKDGQMVEAG
DRLTEGSINPHDILRVCGLKATQRYLVYEVQKVYKSQGVEINDKHIEVMVRQMLHKVKVE
ESGDTDFLPGEYIDVNNFETENAKAIEVGGEPAVARPILLGITKASLATDSFLSAASFQE
TTRVLTDAAIKGKVDPLLGLKENVIIGKLVPAGTGMTRYRNINVVKNHPSQDEVVATEE
NT seq
3960 nt
NT seq
+upstream
nt +downstream
nt
ttgttggatgtaaacaattttgattcgatgcgtataggtttagcttcgccagaaaagatc
agagaatggtcacatggtgaagtgaaaaaaccagagacaattaattatcgtacattgaaa
ccagaacgtgagggtttattctgtgaaaaaatttttggaccaacacgtgactgggaatgt
cattgcggtaagtataaacgtattcgttataaaggtattatttgcgatcgttgcggtgtt
gaagttacgcgttcgaaagtacgtcgtgatagaatggggcacattgaacttgctgcccca
gtatcgcatatttggtatttcaagggcataccaagtcgcatgggattgattctagatata
tcacctagatcattagaaaaagttttatattttgcttcttatatcgtacttgatcctgca
gatactcctttgataaaaaaacaacttttaacagaaaatgagtatcgtgaaaaccgagat
aaatacggtgcagcatttaaagttggtatgggtgctgaatctattaaaaagcttcttgct
gaacttgatttagaaaaaatgagcaaagaattacgtcaagaattaaaagaagtgagcggg
caacgtaaaattcgtgcgattcgtcgcttggaagtagttgaagctttccgcaaatctggc
aataaaccagagtggatgatcatggatgttgtaccagtaattccaccggaattacgtcca
atggttcaactagatggtggccgttttgctacttctgatttaaatgatttatatcgtcgt
gttattaatcgtaataatcgtttaaaacggttacttgatttgggtgcacccgatattatt
gttcgtaacgaaaaaagaatgttacaagaagcggtggatgcattaatcgataatggtcgt
cgtggccgtccagtaacaggcccaggaaatcgtccgcttaaatctttgagcgatatgctt
aaaggtaaacaagggcgtttccgtcaaaacttacttggtaaacgtgttgactattctggt
cgttccgttatcgttgttggaccggaacttaagttacatcaatgtggtttacctaaagaa
atggcacttgaattattcaagccatttgtaatgaaaaaattagtgaatgctggtcacgca
cataatattaagagtgcaaaacgtatggtggaaagaattaggccagaagtttgggatgta
cttgaagaagttattaaagagcatccagtacttttaaatcgtgcaccaacgcttcataga
ttaggaattcaagcatttgaacctgtacttacagaagggcgtgcgttaaaattacatcca
cttgtatgtactgcttacaatgccgattttgatggtgaccaaatggcgatccatttacca
ctatcagcagaagcacaagcagaagcacgtatcttaatgctttccgcacacaatattctt
tcgacgaaagatggtcgcccagttgctgttcctacgcaggatatggtacttggagcgtac
tatttaacaattgttaaaccaggtgctttaggtgaaggcaaagtaatgactggcattaat
gaagcattgcttgcttatcaacataaagaattatcattgcaagcgcaaattaaagtgcgc
gttgaaggttatggtatggttaacaccacgcttggccgtatgatctttaatgaaagcttg
ccaccagaaattcgttattattataaggatgataatgaggaatggtgcttaggtattctt
atggataagaaaaaccttggtaaacttgttggtaactgttaccgtaactttggtaatgca
aaaactgcagaagttattgaccgtgtaaaaaatcttggttattcttatgcttgtcgtgct
ggtatgacagttgcgattgccgacatcaaaattccgaaagagaagaaagaaattcttgca
aatacggaagcacaagttaattcgatcgaaagacaatatcgtcgtggactcatcaccgat
gatgaaagatataacaaagttatcagcttatggacgaaagctacagatgatgtaacaaaa
gccatgatggataacttggatagatttaatccgatttacatgatggctaactctggagcc
cgcggtaatatccaacagatgcgtcagctcgctggtatgcgcggacttatggcggatcca
tcaggtaaaattatcgacttaccaattaaagcaaatttccgtgaaggattaacggtatta
gagtactttatttctacgcatggtgctcgtaaaggacttgcggatacagcgcttagaaca
gccgattctggatatttgacacgtcgtcttgttgacgttgcacaagatgtaattgttcgt
gaagatgattgtgatattgtaggtatcaatttagttcgtgaacgtgcgaaattggcaaac
tctacaagtggagcaattgagttcttaaaagactctttattaggacgcttgcttgcagcg
gaagtaactgatccgaaaacgggcgaagtaatcattcctattgaaacagtgcttgatgaa
gaaaagcttaaactgattgctgaacattcaattcctgaaatcgttgtacgtggtacttct
tatgaaggagatatcagcaatgcaacgacaacagaaacaatcacattaggtgcgccagaa
gaacatgttcgtgagacaatcaaaaaatcaatgattcgcgaaatgcttggtaaaaataca
acaagtgctgtatttgatcaaaatgaaaatgaaattgtacctgcaaatgtaccgcttaca
gaagatcatattgaagcaattctagctagcgatgcaaaagaggtacgagttcgtaacaat
aatattcgcggtattgaagttcaggcaattatggaaggtgctgctgttattgaacactta
aaagatcgtattgccggtcgtgttcttgcagaagatattgttgagcctgaaacaggagaa
gttattgcagcaattaatcaagcagtagatgaagatttagcagaacgtatttgtaaagta
cgtaaaaaagtaaaaattcgttctgtacttacttgtaagtcacaatttggtgtatgtatc
aaatgttatgggcgtaatttggcaacaggtcatcaggtggatgtcggtgaagcggttggt
attatcgcagctcaatctatcggtgaacctggtacacagcttacaatgcgtacgttccat
acgggtggggtagccggtgacgatattacacaaggtttgccacgtgtcgaagagttattt
gaagctcgtaaaccgaaacgtcaatccatcattgctgaaattgatggtcgcgctgaagtt
aaagatacaaaagggatgcgcaaagtaactatcttcccagaaactggcgaagaacgtgtt
taccaaattccttacggtgcacgcattattgcgaaagacggacaaatggtagaagctgga
gatagacttacagaaggatctatcaatccacacgatattctaagggtttgtggtttaaag
gctacacaacgttacttagtatatgaagtacaaaaagtatataaatctcaaggtgttgaa
attaatgataaacatattgaggttatggttcgtcaaatgcttcataaagttaaagttgaa
gaatctggtgatacggatttcttacctggtgaatatattgatgtaaacaactttgagact
gaaaatgcaaaagcaattgaagttggcggagaacccgcagttgctagaccaattttactt
ggtattacaaaagcttctcttgctactgattccttcttatctgcagcatcattccaagaa
acaacacgtgttcttactgatgcagcaataaagggtaaagttgatccattgctcggctta
aaggaaaatgttattatcggtaaattagtaccagctggtacgggcatgacacgttatcgt
aatattaatgttgtaaaaaatcatccatcacaagatgaagttgttgcaactgaagaataa
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integrated database retrieval system
