Streptococcus agalactiae GD201008-001 (serotype Ia): A964_1394
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Entry
A964_1394 CDS
T02248
Symbol
vacB
Name
(GenBank) VacB/Rnb family exoribonuclease
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
sgc
Streptococcus agalactiae GD201008-001 (serotype Ia)
Pathway
sgc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sgc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A964_1394 (vacB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgc03019
]
A964_1394 (vacB)
03016 Transfer RNA biogenesis [BR:
sgc03016
]
A964_1394 (vacB)
Enzymes [BR:
sgc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
A964_1394 (vacB)
Messenger RNA biogenesis [BR:
sgc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
A964_1394 (vacB)
Transfer RNA biogenesis [BR:
sgc03016
]
Prokaryotic type
tRNA degradation factors
A964_1394 (vacB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
HTH_DeoR
S1_RRP5
HTH_24
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
AFS46159
LinkDB
All DBs
Position
complement(1449977..1452382)
Genome browser
AA seq
801 aa
AA seq
DB search
MKEKIIKYLEEHGKTSVNDLAAALDMAGAKAFPKLIKTISNLESHRQLRFDDNGSLSLQK
KEAKKKEITVRGLFRANKAGFGFLSIDQDEDDMFIGKNDIAYAIDGDTVEAVVKKPADRL
NGTAAEARVVNIVERSLKTLVGKFVLDDERPKYAGYIKSKNQKINQKIYIRKEPVVLDGT
EIIKVDIDKYPTRGHDYFVASVRDIVGHQGDVGIDVLEVLESMDIVSEFPEDVIAEANAI
PDAPTEKDLIGRVDLRQEVTFTIDGADAKDLDDAVHIKLLDNGHFELGVHIADVSYYVTE
GSALNREALSRGTSVYVTDRVVPMLPERLSNGICSLNPNLDRLTQSCIMEIDQNGRVVNH
QITQSVINTTYRMTYTAVNDIIAGDEEICSEYESIVSSVQHMVTLHHTLEAMRTRRGALN
FDTSEAKIMVNDKGMPVDIVIRNRGIAERMIESFMLAANETVAEHYARLKLPFIYRIHEE
PKAEKLQKFIDYASVFGVQIQGTATKITQSALQDFMKKVQGQPGSEVLSMMLLRSMQQAR
YSEHNHGHYGLAAEYYTHFTSPIRRYPDLLVHRMIRDYDDKAMDKADHFANLIPEIATQT
SSLERRAIDAERIVEAMKKAEYMEEYVGEEFEGVVASVVKFGMFVELPNTIEGLIHVTTL
PEYYHFNERTLTLQGEKSGKVFRVGQQIKVKLIRSDKETGDIDFDYLPSDFDIVEKVSKS
SREGRPNRSSKREHQHRISDRDNKNKNTSKKKASRKPKRNSDSKSHHHKDDRTTGSTKKK
TKKPFYKGVAKKGQKRKSKKG
NT seq
2406 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaaaaaattataaaatatttggaagaacacggtaaaaccagcgttaatgattta
gctgctgccctagatatggcaggcgcaaaagcatttccaaaattaatcaaaacaatctca
aatttggagagccacaggcaattaagatttgacgataatggaagtctttctcttcaaaag
aaagaagctaagaaaaaggaaatcacagtaaggggtctttttagagcaaataaagcagga
tttggttttcttagtattgaccaagacgaagatgatatgtttatcggaaaaaacgatatt
gcttatgctattgatggtgacacggtagaagctgttgtaaagaaaccagcggaccgtctt
aacgggactgcagcagaagcgcgtgttgttaatattgttgaacgtagtttaaagacgctt
gttggtaagtttgtcttagacgatgagcgccctaaatacgcaggatatatcaaatcgaaa
aatcaaaaaatcaatcaaaagatttatatacgcaaagaaccggtcgttttagacggaaca
gaaattatcaaagtagatattgataaatatccgacacgaggacatgattacttcgtagca
agtgttcgtgatatcgttggacatcaaggagatgttggtattgatgttttagaagtcttg
gaaagtatggatatcgtctcagaatttcctgaggacgttattgcagaagccaatgctatc
ccagatgctccaacggagaaagatttaattgggcgtgttgatttacgtcaagaggtcact
ttcactattgatggagcggacgccaaagatttagacgatgctgtgcatattaaattactg
gataatggtcattttgaacttggagttcatatcgcagatgtatcatactacgttactgaa
ggctctgccttaaatcgtgaagcacttagtcgtggtacgtccgtatatgtcacagatcgc
gttgtaccaatgttaccagagcgtctatctaacggtatatgttcattaaatccaaatctt
gatcgtttaacgcagtcttgtattatggaaattgaccaaaatgggagagttgttaatcat
caaattacacagtcagtgattaataccacttatcgtatgacttataccgctgtaaatgat
attattgctggcgatgaggaaatctgctcagaatatgagtctattgtgtcctcagtacag
catatggtcactttacaccatactttggaagctatgcgtacgcgtcgtggagcgctgaat
tttgacacatctgaagcaaaaattatggttaatgataagggaatgccagttgatattgtt
attcgcaacagaggcattgctgaacgcatgattgagtcatttatgttggcggcaaatgaa
acggttgctgaacattatgctcgtctaaaactgccatttatttatcgtatacacgaagag
cctaaagctgaaaaattacaaaaattcatcgattatgcttctgttttcggtgttcagatt
caaggaacagcaactaaaatcacccaatctgctttacaggactttatgaaaaaagtacaa
gggcagccaggaagtgaagtgttatctatgatgttattgcgctcgatgcaacaagctaga
tattctgaacacaaccatggacattatggacttgctgcggaatattacactcactttact
agccccattcgacgttatccagacttgttagttcatcgtatgattcgtgattatgatgat
aaagcgatggataaagctgatcattttgctaaccttatcccagaaattgcaactcaaacg
tctagtcttgagagacgtgccattgatgctgaacgtattgtagaggcaatgaagaaagcc
gaatatatggaagaatatgttggtgaggaatttgaaggtgtggttgcaagcgttgttaaa
tttggtatgtttgtagaattaccaaatactattgaaggattgattcacgtaacgaccttg
cctgaatattatcactttaatgaacgtacgctgacgcttcaaggtgagaaatctgggaaa
gttttccgtgttggtcaacaaattaaggttaagttgattcgttctgataaggaaactggt
gatatcgattttgattatttaccatcagattttgatattgttgaaaaggtaagtaaaagt
tcgcgtgagggtcgtcctaatagaagttctaaacgagaacatcagcatagaatttctgat
cgtgataataagaataaaaatacatctaagaaaaaagcatctcgaaaacccaaaaggaac
tcggatagcaaatcacatcatcataaagacgatagaacaacaggttcaaccaagaaaaaa
acgaaaaaacctttctataaaggcgttgctaagaaaggtcagaaacggaaatctaagaaa
ggttaa
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