Streptomyces griseorubiginosus: DWG14_05575
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Entry
DWG14_05575 CDS
T06099
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sge
Streptomyces griseorubiginosus
Pathway
sge03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sge00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DWG14_05575 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sge03019
]
DWG14_05575 (rne)
03009 Ribosome biogenesis [BR:
sge03009
]
DWG14_05575 (rne)
Enzymes [BR:
sge01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
DWG14_05575 (rne)
Messenger RNA biogenesis [BR:
sge03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DWG14_05575 (rne)
Ribosome biogenesis [BR:
sge03009
]
Prokaryotic type
rRNA processing factors
DWG14_05575 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Phage_Arf
Imm51
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
AYC41291
UniProt:
A0AAI8L4S7
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All DBs
Position
6270916..6275019
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AA seq
1367 aa
AA seq
DB search
MLEPTEAAESATDSEANTTPSDTLPPRRRRRAASRPAGPPTDAAASAEEVVAPAIPAAEA
EDLVTDEEEKLDESVDTVDSVESTETEAPAEATAPAARPRRRATRRASAPAGSPAAAEAA
ETVVPVAAEAPAEDVTAQSAPAVEATTEDAAPARPRRRATRRVSAPAAAPAETAAAETET
EAVVPVAAATEAADETPAAETPAPAARTRRRATRRAAAPAGAPETAEPSTAEPVTAEVSA
EAPAHAEVAEAEDAAPRRRRRATRRVSAPAAESAAPTESAAPAESAAEETPAAEAPAEPV
TEAPAAEAPVEDAAPRRGRRRAVRQAATGFSEPARRAAGTGDEENGSRRPARPAVAVFQA
PVFTEPQFQTPQRAAAEAAAEAEAGRDEQAEAVASAEPVEAVEAVEETTEEQTGSRRRRR
RRGAPEEPEARETAVSATETVVEEEETDEGAEDSVDEDETEDTGSRRRRRRGGRRRRRGE
SAEASGDEDSDDSDEPAAEQSSQDDEEDEDDEDARSDESGGSSSSSRRRRRRRRRAGDAS
TDAEPGDGDPERTVVKVREPRPKAEPSDEVQSIKGSTRLEAKKQRRREGREQGRRRVPII
TEAEFLARREAVERVMVVRQHGERTQIGVLEDGVLVEHYVNKEQATSYVGNVYLGKVQNV
LPSMEAAFIDIGKGRNAVLYAGEVNFEALGMANGPRRIESALKSGQSVLVQVTKDPIGHK
GARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTILKKIVPEDAGVIVRTAAEG
ASEDELRRDVERLQAQWEDIQKKAKSGNAPTLLYGEPDMTVRVVRDIFNEDFSKVVVSGQ
DAWETVHGYVSHVAPDLAERLQKWTSEVDVFATYRIDEQLAKALDRKVWLPSGGSLVIDR
TEAMVVVDVNTGKFTGQGGNLEETVTRNNLEAAEEIVRQLRLRDLGGIIVIDFIDMVLES
NRDLVLRRLLECLGRDRTKHQVAEVTSLGLVQMTRKRVGQGLLESFSETCVHCNGRGVIV
HMEQPSSAGGGGKRKKRGRGGDGHEHTHEAAVAVEAPEAPEEVETEAELAAEVAEPISLA
PTEFAPDEELYSSVAEAEAAATRGRGRRRTSRRASAPAGAPRGGSRRSGGTEEPAVEEGP
VSESTEVPTAQTVPAEVEAERPVQPETAAEAQAAPAAAEDPVVEAAPAEEAAPKGRTRRR
ATRKVSAPAGSPAGAEATVVTVAEAAPEPQAEEAPVAAPTEAESEPVAESAAPARPRRRA
VRKATAPTASEEAAVVVVSSVEAPAEPAEPVAEEESAEEAAPAKKTARKTAKKATAKKAA
TKKTVAKKTAAKKTVAKKTTAKKAASKKTVAAEQSSQPSVSSQTDEA
NT seq
4104 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaaccgaccgaagccgcagagtccgccacggactccgaagccaacaccaccccc
agcgacaccctgccgccgcgccgccggcgccgtgccgcgtcccggcctgctggtccgccg
accgacgccgccgcctcggccgaggaggtcgtcgccccggccataccggccgcggaggcc
gaggacctcgtcaccgacgaggaggagaagctcgacgagagcgtcgacaccgtcgactcc
gtcgagagcacggagaccgaggcaccggccgaggccaccgcgcccgccgcgcgaccgcgt
cggcgtgccacccgccgggcgtccgcgcccgccggttcccccgcggcggccgaggccgcc
gagaccgtggtgcccgtggccgccgaggcgcccgccgaagacgtgaccgcgcagagcgca
cccgccgtcgaggccacgaccgaggacgcggctccggcgcgcccgcgtcggcgtgcgacc
cgccgtgtgtcggcgccggccgcggctccggccgagaccgcggcagccgagaccgagacc
gaggccgtggtgccggtcgccgccgccaccgaggccgccgacgagacgcccgccgcggag
acccccgcccccgccgcgcgcacccggcgccgggccactcggcgtgccgccgcgcccgcc
ggggcccctgagaccgccgagccgtcgaccgccgagccggtgaccgcggaggtgtccgcc
gaggcccccgcgcacgccgaggtcgcggaggccgaggacgcggctccgcgtcgccgccgc
cgtgccacccgtcgcgtgtccgccccggccgccgagagcgccgcgcccacggagagcgcc
gcgcccgccgagagcgctgccgaggagacgcccgccgccgaggcgcccgccgagcccgtc
acggaggctcccgccgcggaggcccccgtcgaggacgccgccccccgtcgtggccgtcgc
cgggccgtgcgccaggccgccaccggattctccgagcccgcgcggcgagccgcaggcacc
ggggacgaggagaacggctcccggcgccccgcgcggcccgcggtcgccgtgttccaggcc
cccgtcttcaccgagccgcagttccagaccccgcagcgggcggctgccgaggccgccgcc
gaggcggaggccggtcgggacgagcaggccgaggccgtcgcgtccgccgagcccgtcgag
gccgtggaagccgtcgaggagaccaccgaggagcagaccgggtcgcggcgccgccgccgg
cgccgtggtgcccccgaggagccggaggcgcgggagaccgccgtgtccgccaccgagacc
gtcgtcgaggaagaggagacggacgagggcgccgaggactccgtcgacgaggacgagacc
gaggacaccggttcgcgtcggcgtcgtcgtcgcggtggccgtcgccgccgccggggcgag
tccgccgaggcctccggtgacgaggactccgacgactcggacgagcccgccgccgagcag
tcctcccaggacgacgaagaggacgaggacgacgaggacgcccgttccgacgagtccggc
gggtccagctccagcagccggcgccgccggcgccgccggcgccgggccggggacgcgtcc
accgacgccgagcccggtgacggcgaccccgagcggaccgtcgtcaaggtgcgcgagccc
cgtccgaaggccgagccctccgacgaggtgcagtccatcaagggctcgacccgtctggag
gccaagaagcagcgccgtcgcgaaggccgtgagcagggccgcaggcgtgtgccgatcatc
accgaggccgagttcctcgcccgccgcgaggccgtagagcgggtgatggtcgtgcgccag
cacggcgagcgcacccagatcggcgtgctcgaggacggcgtgctcgtcgagcactacgtc
aacaaggagcaggccacctcgtacgtcggcaacgtctacctgggcaaggtccagaacgtc
ctgccgtccatggaggccgccttcatcgacatcggcaagggccgcaacgcggtcctctac
gccggtgaggtcaacttcgaggcgctcggcatggccaacgggccgcgccgcatcgagagc
gcgctgaagtccggccagtccgtgctcgtccaggtcaccaaggacccgatcgggcacaag
ggcgcgcgtctgaccagccaggtctccctgccgggccgctacctcgtgtacgtccccgag
ggctcgatgaccggcatcagccgcaagctgcccgacaccgagcgggcgcggctgaagacc
atcctcaagaagatcgtccccgaggacgcgggcgtcatcgtccgcaccgccgccgagggc
gcctccgaggacgagctgcgccgcgacgtcgagcggctccaggcgcagtgggaggacatc
cagaagaaggccaagagcggcaacgccccgacgctgctctacggcgagccggacatgacc
gtccgggtcgtccgcgacatcttcaacgaggacttctccaaggtcgtcgtcagcggtcag
gacgcctgggagaccgtccacggatacgtctcccacgtcgcccccgacctcgccgagcgg
ctccagaagtggacctccgaggtcgacgtcttcgccacgtaccggatcgacgagcagctc
gccaaggcgctggaccgcaaggtctggctgccgagtggcggctcgctggtgatcgaccgg
accgaggcgatggtcgtggtcgacgtcaacaccggcaagttcaccggccagggcggcaac
ctggaggagacggtcaccaggaacaacctggaggcggccgaggagatcgtgcgccagctg
cggctgcgtgacctcggcggcatcatcgtcatcgacttcatcgacatggtgctggagtcc
aaccgggacctggtgctgcggcgtctgctggagtgcctgggccgggaccggaccaagcac
caggtcgccgaggtcacctcgctgggcctggtccagatgacccgcaagcgggtcggccag
ggcctgctggagtccttctcggagacctgcgtccactgcaacggccgcggcgtcatcgtg
cacatggagcagccgagctccgccggtggcggcggcaagcgcaagaagcgcgggcgcggt
ggcgacggccacgagcacacccacgaggccgcggtcgccgtggaggctcccgaggctccg
gaagaggtcgagaccgaggccgagctcgccgccgaggtggccgagccgatctccctggcc
cccaccgagttcgcgccggacgaggagctgtacagcagcgtcgccgaggcggaggccgcg
gccacgcgcggacggggtcgtcgcaggacgagccgtcgggcgtcggctccggccggtgcg
ccgcgcggcgggtcgcgcaggtcgggcgggaccgaggagccggccgtcgaggagggcccg
gtctccgagagcaccgaggtgccgaccgctcagacggtgcccgccgaggtcgaggccgag
cgtcccgtgcagccggagacggccgccgaggcccaggccgcgccggccgccgcggaggac
ccggtggtcgaggcggctcccgccgaggaggccgcgccgaagggccgtacccgtcgtcgg
gccacccgcaaggtgtccgcacccgccgggtcgcccgccggggcggaggccaccgtggtg
acggtcgccgaggccgcgcccgagccgcaggcggaggaggccccggtggccgcgccgacc
gaggccgagtccgagccggtcgccgagagcgccgccccggcacgtccgcgtcgccgggcc
gtccgcaaggccaccgcgcccaccgcgtccgaggaggcggccgtcgtggtcgtgtcttcc
gtggaggccccggccgagccggcggagcccgtcgcggaggaggagtccgccgaggaggcg
gctccggccaagaagacggcccgcaagacggccaagaaggccacggcgaagaaggccgcg
accaagaagaccgtcgccaagaagacggcggcgaagaagaccgtcgccaagaagacgacc
gcgaagaaggcggcgtcgaagaagacggtggcggccgagcagtcgtcgcagccgtccgtc
tcgtcccagaccgacgaggcctga
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