Stenotrophomonas geniculata: RKE57_06510
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Entry
RKE57_06510 CDS
T09411
Name
(GenBank) AlkA N-terminal domain-containing protein
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
sgen
Stenotrophomonas geniculata
Pathway
sgen03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sgen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RKE57_06510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sgen03000
]
RKE57_06510
03400 DNA repair and recombination proteins [BR:
sgen03400
]
RKE57_06510
Enzymes [BR:
sgen01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
RKE57_06510
Transcription factors [BR:
sgen03000
]
Prokaryotic type
Helix-turn-helix
AraC family
RKE57_06510
DNA repair and recombination proteins [BR:
sgen03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
RKE57_06510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HhH-GPD
HTH_AraC
RecR_HhH
CobS_N
Motif
Other DBs
NCBI-ProteinID:
WNF11787
LinkDB
All DBs
Position
complement(1408379..1409857)
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AA seq
492 aa
AA seq
DB search
MDTALALDTAACDRARLARDARFDGVFFTAVRSTGIYCRPVCPAPPPKPRNITYYPTAAA
AAAAGYRPCLRCRPELAPQAQQALAGQIVQRALALIHGGFLQEQPVADLAQKIGLSARQL
QRLFVEHLGATPGQIHATHRLLLAKQLLTETTLPVTDVALAAGYNSLRRFNTAFLQGCGM
APTALRRQHQPPAADDGGLVLRLVYRPPLDFPRMLAFLRKRSLPGIELIGEDSYQRVLGT
PERPTLLRVTADPKRPELRLQLGAVDPRLIPDIVRRVRRVFDLDADLQQVHAALGEEPLL
ARGIAERPGLRVPGGWDGFEVGVRAVLGQQVSVAAATTFARRLVDAYGAHLPGMPSEFDR
QFPAPEVLAEAPLESIGLPRTRAATVRALAAACASGQLDFGPGQALEEFVARCVALPGIG
PWTAQYIALRGLGQPDAFPAGDLVLQQVLGHAQGQRLSERATEARSQPWRPWRAYAVLHL
WHLSGTFVGEPT
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atggataccgccctcgccctcgacaccgccgcctgcgaccgcgcccgcctggcccgcgac
gcacgcttcgacggcgtgttcttcaccgccgtgcgcagcaccggcatctactgccgcccg
gtgtgcccggcaccgccaccgaagccgcgcaacatcacctactacccgaccgccgctgcc
gccgccgccgccggctaccgcccgtgcctgcgctgtcgtcccgaactggcgccgcaggca
cagcaggcattggctgggcagatcgtgcagcgcgccctcgccctgatccatggcggcttc
ctgcaggagcagcccgttgccgacctcgcgcagaagatcggcctcagcgcgcgccagctg
cagcgcctgttcgttgaacacctgggcgcgacgccggggcagatccacgccacccatcgc
ctgctgctggccaagcagctgctgaccgagaccacgctgccggtgaccgatgttgcgctg
gccgccggctacaacagcctgcgccgcttcaataccgccttcctgcagggctgcggcatg
gcaccgacggcactgcgtcgccagcatcagccgccggccgccgatgacggcggcctggta
ctgcgcctggtgtaccgtccaccgctggatttcccgcgcatgctggccttcctgcgcaag
cgcagcctgcccggcatcgaactgatcggcgaagacagctaccagcgcgtgctcggcaca
cccgagcgccccaccctgctgcgcgtcaccgccgacccgaaacgcccggaactgcgcctg
cagctgggcgcggtcgatccgcgcctgatccccgacatcgtgcgccgcgtgcgtcgcgtg
ttcgatctggatgccgacctgcagcaggtgcatgccgcgctgggcgaggaaccgctgctg
gcgcgaggcatcgccgaacgtcccggtctgcgcgtgcccggtggctgggatggcttcgag
gtgggcgtacgcgccgtgctcggacagcaggtcagcgtggccgcggccaccaccttcgcg
cggcgcctggtcgatgcctatggcgcacacctgccgggcatgccatcggaattcgatcgc
cagttccccgcgcccgaggtactggctgaggcgccgctggaatcgatcggcctgccgcgc
acccgcgccgccaccgtgcgtgcgctggccgctgcctgcgccagcggccagctcgacttc
gggcccggtcaggcattggaggaattcgttgcgcgctgcgtggcactgcccggcatcggc
ccgtggaccgcgcagtacatcgcgctgcgcggacttggccagcccgatgccttccccgcc
ggtgacctggtgctgcagcaggtcctcggccacgcccaaggccagcgcctgagcgagcgt
gcgaccgaagcccgctcgcaaccgtggcgcccgtggcgcgcctatgccgtgctgcatctg
tggcacctgtccggcaccttcgttggagaaccgacatga
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