Stenotrophomonas geniculata: RKE57_06540
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Entry
RKE57_06540 CDS
T09411
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sgen
Stenotrophomonas geniculata
Pathway
sgen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sgen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RKE57_06540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgen03019
]
RKE57_06540
03009 Ribosome biogenesis [BR:
sgen03009
]
RKE57_06540
Enzymes [BR:
sgen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RKE57_06540
Messenger RNA biogenesis [BR:
sgen03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RKE57_06540
Ribosome biogenesis [BR:
sgen03009
]
Prokaryotic type
rRNA helicases
RKE57_06540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
DUF6702
Motif
Other DBs
NCBI-ProteinID:
WNF11793
LinkDB
All DBs
Position
1414208..1416154
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AA seq
648 aa
AA seq
DB search
MSQDSQAPLQFAQLGLSEPVMQAVTAIGYETPSPIQAATIPAMLEGRDVLGQAQTGTGKT
AAFALPVLSNIDLQQIKPQALILAPTRELAIQVAEAFQSYSSKIPGFRVLPVYGGQPYGQ
QLSALRRGVHIVVGTPGRVIDHLDRSTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKL
PEQRQVALFSATMPPQIRRIAQTYLQDPVEVTIAAKTTTSANIRQRYWWVSGMHKLDALT
RILEVEPFDAMIIFARTKAGTEELASKLQARGLAAAAINGDMQQAQRERTIAMLKEGKLD
ILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFATPREKGML
RQIERATRQPIEEMQLPSVEAVNDTRINKFTSRISETLGAGGLDFYRQLLERFENEQNVP
AIEIAAALAKLLQGDTPFLLQPPVRAPREERAPRERFDRGDRPERGDRFDRNERGPRFER
GPRRDDAEGGFEQRPRREVPPRGAPEQGMETYRISVGHQHGVKPANIVGAIANEAGLESR
FIGRIDIHDDFSLLDLPAQMPPDVLSHLQKVWVSGQQLQMRALAPGEDTNPAPRPFKPRF
DKRGPGGPGGPRRGGPGGPGGHGGDRGGDRDSRPPRRDGFKPRGPRSF
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgtcccaagattcccaagcgccgctgcagtttgcgcagctcggcctgtccgagcccgtg
atgcaggcggtcaccgccatcggctacgaaaccccgtcgccgatccaggccgccaccatc
ccggcgatgctggaaggccgcgacgtgctgggccaggcccagaccggcaccggcaagacc
gccgcgttcgcgctgccggtactgtccaacatcgacctgcagcagatcaagccgcaggcc
ctgatcctggcaccgacccgcgagctggccatccaggttgccgaggcgttccagtcctat
tcgtcgaagatcccgggcttccgcgtgctgccggtgtacggcggccagccgtacggccag
cagctgtcggccctgcgccgtggtgtgcacatcgtggtcggtacccccggccgcgtgatc
gaccacctggaccgcagcaccctggacctgtccgagctgaaaaccctggtgctggacgaa
gccgatgaaatgctgcgcatgggcttcatcgacgacgtcgaagccgtgctgaagaagctg
ccggagcagcgccaggtggccctgttctcggccaccatgccgccgcagatccgccgcatc
gcgcagacctacctgcaggacccggtggaagtgaccatcgcggccaagaccaccacctcg
gccaacatccgccagcgttactggtgggtgagcggcatgcacaagctggatgcgctgacc
cgcatcctggaagtcgagccgttcgacgcgatgatcatcttcgcgcgtaccaaggccggc
accgaagaactggccagcaagctgcaggcccgtggcctggccgctgccgccatcaacggt
gacatgcagcaggcccagcgtgagcgcaccatcgccatgctgaaggaaggcaagctggac
atcctggtggccaccgacgtggccgcccgtggcctggacgtggagcgcatcagccacgtg
ctgaactacgacatcccgtacgacaccgaaagctacgtgcaccgcatcggccgtaccggc
cgtgccggccgcagcggcgaggcgatcctgttcgccaccccgcgcgagaagggcatgctg
cgccagatcgagcgcgctacccgccagccgatcgaagagatgcagctgccgagcgtggag
gcggtcaacgacacccgcatcaacaagttcacctcgcgcatcagcgaaaccctcggcgcc
ggtggcctggacttctaccgccagctgctggagcgcttcgagaacgagcagaacgtgccc
gccatcgagatcgccgccgcgctggcaaagctgctgcagggtgacaccccgttcctgctg
cagccgccggtgcgcgccccgcgtgaagagcgcgcgccgcgcgagcgcttcgaccgtggc
gaccgtccggagcgtggcgatcgattcgaccgcaacgagcgtggtccgcgctttgagcgt
ggcccgcgtcgtgacgacgccgaaggtggtttcgagcagcgtccgcgccgcgaggttccg
ccgcgtggtgcgccggagcagggcatggagacctaccgcatttcggtgggccaccagcat
ggcgtgaagccggccaacatcgtcggcgccattgccaacgaagccggactggaaagccgc
ttcatcggccgcatcgacatccacgacgacttctcgctgctggacctgccggcgcagatg
ccgccggacgtgctgtcgcacctgcagaaagtgtgggtgtccggccagcagctgcagatg
cgtgcgctggccccgggtgaagacaccaacccggccccgcgtccgttcaagccgcgcttc
gacaagcgtggtccgggcggcccaggtggcccgcgtcgtggtggtccgggtggtccgggt
ggccacggcggcgaccgcggcggtgaccgcgacagccgcccgccgcgtcgtgacggcttc
aagccgcgcggtccgcgcagcttctaa
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