Stenotrophomonas geniculata: RKE57_06690
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Entry
RKE57_06690 CDS
T09411
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
sgen
Stenotrophomonas geniculata
Pathway
sgen03030
DNA replication
sgen03430
Mismatch repair
sgen03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sgen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RKE57_06690 (dnaE)
03430 Mismatch repair
RKE57_06690 (dnaE)
03440 Homologous recombination
RKE57_06690 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sgen03032
]
RKE57_06690 (dnaE)
03400 DNA repair and recombination proteins [BR:
sgen03400
]
RKE57_06690 (dnaE)
Enzymes [BR:
sgen01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RKE57_06690 (dnaE)
DNA replication proteins [BR:
sgen03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RKE57_06690 (dnaE)
DNA repair and recombination proteins [BR:
sgen03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RKE57_06690 (dnaE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
tRNA_anti_2
Ferredoxin_N
Motif
Other DBs
NCBI-ProteinID:
WNF11821
LinkDB
All DBs
Position
complement(1448455..1452045)
Genome browser
AA seq
1196 aa
AA seq
DB search
MSNSRFVHLHVHTEFSLADSTIRVPAKPDQADPKKAKQANLLSRSVELGLPALAVTDLNN
LFALVKFYKAAEGVGIKPIAGADVLIAEEGQDPWRMTLLCRDREGYLSLSRLLTRAWMEG
HRPEGGVAIHPDWLKAGNANLFALAGRQSLAGRLALDGKHELAEQQLADWQRVFGDGLHL
ELTRTGREGEETFNQFALMAAGQRGLPVVASNDVRFLSPTDFSAHEARVCISTGRVLDDP
KRPREYSDQQYLKSAEEMCALFADIPDAIDNTLALAERCNIEMRLGTYFLPNYPVPDDET
LDTWIQKMSRDGLEERLEKNPLAPGKTREEYFERLEFELNTIIKMGFPGYFLIVADFIQW
GKNQGIPIGPGRGSGAGSLVAWALKITDLDPLPYNLLFERFLNPERVSMPDFDIDFCMDR
RDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDSGRVLGFPYGLVDGVSKLIPNILGIH
LKDALGKGKEGPSSEMASPELIQRYETEDDVRDLIDLALQLEDLTRNAGKHAGGVVIGPE
PLSEFCPLYAEHDENGLGKNPVTQFDKNDVEEVGLVKFDFLGLRTLTIIDWAVKAINKRH
ERAGIPPVDIAAIPLDDTPTYKDIFANGNTGAVFQFESSGMRRLLKDARPDRFEDLIALV
SLYRPGPMDLIPSFNARKHGQEEIIYPDPRTEAILKDTYGIMVYQEQVMQMAQIVGGYSL
GGADLLRRAMGKKVPAEMAKHREIFREGAAKDGVDEAKADAIFDLMEKFAGYGFNKSHAA
AYALVSYQTAWLKRHYPAEFMAATLSSDLDNTDKVVGFLDEVRNLGLTVLPPKVNQSAFM
FEAVTPDTIQYGLGAIKGVGQGACEAVVEERLKGGPFKDLLDFCTRVGSAKLNRRTLEAM
INCGALDELGRNRASLMLQLPEVIKATDQMARERASGQNSLFGGPDPSTVSIQLDLPEAE
EWPLLQRLNGERDTLGFYLSGHPFDPWRDDVRDLVGNDLGSVEKIWSANSGGGGGGEKRW
RPEVQTVLAGQVVGVRRKGESQIFIQLEDGRGRVECSAFSDAMAEFGHLMTKDRILVVKG
GLREDEFNGGYALRIRQCWDFDEVCANYATRLSLRLDLRQQRPVWERINALLDRHRPGRT
PLRLDLLLKGPQGGIAGMLDVSGQSAVRIDSKLMEALRADPAVRTLKVRYSPPWAS
NT seq
3591 nt
NT seq
+upstream
nt +downstream
nt
atgtccaactcccgcttcgtacatctccacgtccacaccgagttctcgctggcggactcc
accatccgtgtgccggccaaaccggaccaggcggacccgaagaaggccaagcaggccaac
ctgctgtcgcgctcggtcgagctcggcctgcccgcgctggcagtgaccgacctcaacaac
ctgttcgcgctggtcaagttctacaaggccgccgaaggcgtgggcatcaagccgatcgcc
ggtgccgacgtgctgatcgccgaggaaggccaggacccgtggcgaatgaccctgctgtgc
cgcgatcgcgagggctacctgagcctgtcgcggctgctgacccgcgcctggatggaaggc
catcgcccggaaggcggtgtggccatccatccggactggctgaaggccggcaacgccaac
ctgttcgcgctggccggccggcagagcctggccgggcgcctggcgctggacggcaagcat
gagctggccgagcagcagctggccgactggcagcgcgtgttcggcgacggcctgcacctg
gaacttacccgtaccggccgcgagggcgaggaaaccttcaaccagttcgcgctgatggcg
gccggccagcgtggcctgccggtggtggccagcaatgatgtgcgcttcctgtcgcccacc
gatttcagcgcgcacgaagcgcgcgtgtgcatttccaccggccgcgtgctggacgatccc
aagcgcccgcgcgagtacagcgaccagcagtacctgaagtcggccgaggagatgtgcgcg
ctgttcgccgacatccccgatgcgatcgacaacacgctggcgctggccgagcgctgcaac
atcgagatgcggctgggcacctacttcctgcccaactacccggtgcccgacgacgagacc
ctggacacctggatccagaagatgtcgcgcgacggcctggaagagcgcctggagaagaat
ccgctggcgccgggcaagacccgcgaagagtatttcgagcgcctggagttcgagctcaac
accatcatcaagatgggcttcccgggctacttcctgatcgtggccgacttcatccagtgg
ggcaagaaccagggcatcccgatcggcccgggccgtggttccggtgccggttcgctggtg
gcgtgggcgctgaagatcaccgatctggacccgttgccgtacaacctgctgttcgagcgc
ttcctgaacccggaacgcgtgtcgatgcccgacttcgacatcgacttctgcatggaccgc
cgcgacgaggtgatcgactacgtcgcacgcaagtacgggcgcgagcgcgtcagccagatc
atcacctacggcaccatggccgccaaggcggtggtgcgcgactccggtcgcgtgctcggc
ttcccgtacggcctggtcgacggcgtttccaagctgatcccgaacatcctgggcatccac
ctgaaggatgcactgggcaagggcaaggaaggccccagctcggaaatggcctcgccggaa
ctgatccagcgctacgagaccgaggacgatgtccgcgacctgatcgacctggcgctgcag
ctggaagacctgacccgcaacgccggcaagcatgccggtggcgtggtgatcgggcccgag
ccgctgagcgagttctgcccgctgtatgccgaacacgacgagaacgggctgggcaagaac
ccggtcacccagttcgacaagaacgacgtggaagaagtgggcctggtgaagttcgacttc
ctcggcctgcgcacgctgaccatcatcgactgggcggtgaaggcgatcaacaagcgccac
gagcgcgccggcattccgccggtggacatcgccgcgatcccgctggacgacacgcccacc
tacaaggacatcttcgccaacggcaacaccggcgcggtgttccagttcgaatcctcgggc
atgcgccgcctgctgaaggacgcgcgccccgaccgtttcgaagacctgatcgcgctggtg
tcgctgtaccgccctggcccgatggacctgattccttcgttcaacgcgcgcaagcacggg
caggaagaaatcatctatcccgatccgcgcaccgaagcgatcctgaaggacacctacggc
atcatggtgtaccaggagcaggtgatgcagatggcgcagatcgtcggcggctactcgctg
ggcggcgccgacctgctgcgccgtgcgatgggcaagaaggtgccggccgaaatggccaag
caccgcgagatcttccgcgaaggtgcggccaaggacggcgtggacgaagccaaggccgat
gcgatcttcgacctgatggagaagttcgccggctacggcttcaacaagtcgcacgccgcc
gcctatgcgctggtcagctaccagaccgcgtggctgaagcgccactacccggccgagttc
atggcggccacgctgtcgtccgacctggacaacactgacaaagtggtcggcttcctcgac
gaggtgcgcaacctcggcctgaccgtgctgccgccgaaggtgaaccagtcggccttcatg
ttcgaagcggtcaccccggacacgatccagtacggcctgggcgcgatcaagggcgtgggc
cagggcgcctgcgaagcggtggtcgaggaacgactgaagggcggcccgttcaaggacctg
ctcgacttctgcacccgcgtcggctcggccaagctcaaccggcgcacgctggaagcgatg
atcaactgcggtgcgctcgatgagctcggccgcaaccgtgcctcgctgatgctgcagttg
ccggaagtgatcaaggccactgatcagatggcacgcgagcgtgcgtccggacagaactcg
ctgtttggcgggcccgacccgagcaccgtttcgatccagctggacctgccagaagccgaa
gaatggccgttgctgcagcgcctcaacggcgagcgcgacacgctaggcttctacctcagc
ggccacccgttcgatccctggcgcgacgatgtgcgcgatctggtaggcaacgacctgggt
tcggtggagaaaatctggagcgccaacagcggtggcggcggtggcggcgagaagcgctgg
cgcccggaggtgcagaccgtgctggcaggccaggtggtcggcgtgcgccgcaagggcgaa
agccagatcttcatccagcttgaggatggccgcggccgcgtcgagtgcagtgcgttctcc
gatgcaatggccgagttcggccacctgatgaccaaggaccgcatcctggtggtcaagggc
ggcctgcgcgaggacgagttcaacggtggctacgcgctgcgcatccgccagtgctgggac
ttcgacgaagtctgcgccaactacgccacgcggctgtcgctgcgcctggacctgcgccag
cagcgcccggtctgggagcgcatcaatgccctgctcgaccgccatcgcccggggcgcacg
ccactgcgcctggacctgctgctgaagggtccgcagggtggcatcgccggcatgcttgat
gtgtccgggcaaagcgcggtacgcattgattccaagctgatggaggcgctgcgcgccgac
ccggccgtgcgcacgctgaaagtgcgctacagcccaccgtgggccagctga
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