Stenotrophomonas geniculata: RKE57_10760
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Entry
RKE57_10760 CDS
T09411
Name
(GenBank) excinuclease ABC subunit UvrA
KO
K03701
excinuclease ABC subunit A
Organism
sgen
Stenotrophomonas geniculata
Pathway
sgen03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sgen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RKE57_10760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sgen03400
]
RKE57_10760
DNA repair and recombination proteins [BR:
sgen03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RKE57_10760
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
RKE57_10760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
UvrA_DNA-bind
DnaJ_CXXCXGXG
AAA_21
nSTAND1
AAA_29
AAA_16
DUF4350
RsgA_GTPase
MCR
Motif
Other DBs
NCBI-ProteinID:
WNF12593
LinkDB
All DBs
Position
complement(2319887..2322538)
Genome browser
AA seq
883 aa
AA seq
DB search
MSNTPFGESSCAAAASGCIEVRGAREHNLKNVDVSIPRNALVVFSGVSGSGKSSLAFGTV
FAEAQRRYFESVAPYARRLIDQAGVPDVDAIDGLPPAVALQQQRGASNARSSVGSVTTLS
SLVRMMFSRAGAYPAHQPMLYAEDFSPNTPQGACSTCHGLGYVYEVTEALMVPDPSLSIR
ERAIASWPPAWHGQNLRDILVTLGYDIDVPWKKLPKKDREWILFTEETPTVPVYAGFTPA
ETRTALKRKQEPSYMGTYTGARRYVLHTFANTQSALMRKRVSRYMEGKLCPACHGKRLKP
EALSVTFAGVDIGEFMRLPLDHLADLLEPIAQGDFGAHNKGARASRRATPRDRARRAASG
RATHEGAPDVRLTSALSEEKRLAAQRLAGGVMARVRQLRELGLGYLSLDRATPTLSAGEL
QRLRLATQLSSLLFGVLYVLDEPSAGLHPADSQALYDALDRLRDGGNSVFVVEHDLELMR
RAQWLVDVGPEAGERGGRVLYSGEPDGLRQVKDSRTARYLFDQVPAPASRQRSANSWLEL
KGIHRHNLQGVDAQVPLGLLTAVTGISGSGKSSLMAQALPELMLLHLGHEPVDDSADSTP
PDGPTVMEATRGQLAGDVDAIQRVVQVDQKPIGRTPRSNLATYTGLFDHVRKLFAATPDA
RRRRFDAGRFSFNVAKGRCETCEGEGFVSVELLFMPSVYAPCPTCHGARYNEATLKVLWN
DRNIAEVLQMTVDQAHAFFAEEDAIARPLQLLQEIGLGYLRLGQPATELSGGEAQRIKLA
TELQRSQRGRTLYVLDEPTTGLHASDADRLLAQLQRLVEAGNTVVMIEHDMRSVAQADWV
IDVGPGAGGAGGTIVAKGTPQQVARAKGSRTAPFLARELGQAS
NT seq
2652 nt
NT seq
+upstream
nt +downstream
nt
atgtccaacaccccctttggcgagtcgtcatgtgctgccgcagccagcggttgcatcgaa
gtccgcggtgcgcgcgagcacaacctgaagaatgtcgatgtctccattccacgcaatgca
ctggtggtgttctccggcgtgtcgggatccggcaagtcctcgttggccttcggcacggtt
ttcgccgaggcgcagcggcgctacttcgaatccgtcgcaccctatgcgcgccgcctgatc
gaccaggcgggcgtgcccgatgtggatgccatcgacgggctgcccccggcggtcgccctg
cagcagcagcgcggcgccagcaatgcgcgctcctcggtgggcagcgtgaccacgctgtcc
agcctggtgcgcatgatgttttcgcgggcgggagcctacccggcccaccagcccatgctg
tacgccgaagacttctcgcccaacaccccacagggcgcctgcagcacctgccatggcctg
gggtatgtctacgaagtgactgaagcactgatggttccggacccgtcgctgagcatccgc
gagcgcgccatcgcgtcctggccaccggcatggcatggccagaacctgcgcgacatcctg
gtcacgttgggctacgacatcgatgtgccgtggaagaaactgccgaagaaggaccgtgag
tggatcctgttcaccgaggagacgcccaccgtgccggtctatgccggcttcacgccggcc
gagacccgtaccgcactcaagcgcaagcaggagcccagctacatgggcacgtacaccggc
gcacgccgctacgtgctgcacacctttgccaacacccagagcgccctgatgcgcaagcgt
gtgtcgcgctacatggaaggcaagctgtgcccggcctgccacggaaagcgcctgaaaccg
gaggcgctttcggtcacctttgccggtgtggatatcggcgagttcatgcggctgccgttg
gatcacctggcggacctcctggagcccatcgcgcagggtgatttcggcgcacacaacaag
ggcgcacgtgccagcaggcgtgcgacaccccgcgatcgtgcccggcgggcagcaagtggc
cgcgcgacccacgaaggcgcacccgacgtgcgcctgacctcagccttgtctgaggaaaag
cgcctggcggcacaacgcctggcgggcggggtcatggcgcgtgtacggcaactgcgcgag
ctcggcctgggctatctatcacttgatcgcgccacgcccacgctatcggccggcgaactg
cagcgcctgcggctggccacgcagctcagctcgttgctgtttggcgtgctgtacgtgctc
gacgagccctcggccggcctgcatccggctgacagccaggcgctgtacgacgcgctggac
cggctgcgcgacggcggcaactcggtgttcgttgtcgagcacgatctggaactgatgcgc
cgcgcgcagtggctggtggacgtgggaccggaggccggcgagcggggagggcgcgtgctt
tacagcggcgaacccgatggcctgcgccaggtaaaggattcgcgcacggcccggtatctg
ttcgaccaggtgcctgcgcctgccagccggcagcgcagtgccaacagctggctcgaactg
aagggcatccatcgccacaacctgcagggcgtggacgcgcaggtgccgctggggctgctg
acagcagtgaccggcatttccggatcgggcaagtccagcctgatggcacaagcgctgccc
gagctgatgctgctgcacctggggcacgagcccgtggacgacagcgccgacagcacgccc
ccggatgggccgaccgtgatggaagcgacgcggggccagctggccggcgatgtggacgcc
attcaacgcgtggtgcaggtcgaccagaagcccatcggccgcacgccacgatccaacctg
gccacctacaccggcctgttcgaccacgtgcgcaagctgttcgccgcaacgccagacgcg
cgccgccgtcgcttcgatgcgggacgcttctcgttcaacgtggccaagggccggtgcgag
acctgcgaaggcgagggcttcgtcagtgtcgaactgctgttcatgccaagcgtctatgcg
ccgtgcccgacctgccatggcgcccgctacaacgaggccacgctgaaggtgttgtggaac
gaccgcaacatcgccgaggtcctgcagatgacggtcgaccaggcgcacgcgttcttcgcc
gaagaagacgccattgcccgcccgctgcagttgctgcaggaaataggtctgggctacctg
cggctggggcagccggccaccgagctttcaggcggtgaagcacagcgcatcaagctggcg
accgagctgcagcgcagccagcgcgggcgcacgctgtatgtgctggatgagcccaccacc
ggcctgcatgcatctgacgcggacaggttgctggcgcagctgcaacgactggtggaggca
ggcaacaccgtggtgatgatcgaacacgacatgcgttcggtcgcacaggcagattgggtg
attgatgtcgggccaggtgcaggcggtgcgggcggcaccatcgtggcgaagggcacgccg
caacaggtggcccgcgccaagggcagcaggacggcgccgtttcttgcgcgcgagctggga
caggccagctga
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