Stenotrophomonas geniculata: RKE57_14015
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Entry
RKE57_14015 CDS
T09411
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sgen
Stenotrophomonas geniculata
Pathway
sgen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sgen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RKE57_14015 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgen03019
]
RKE57_14015 (rne)
03009 Ribosome biogenesis [BR:
sgen03009
]
RKE57_14015 (rne)
Enzymes [BR:
sgen01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
RKE57_14015 (rne)
Messenger RNA biogenesis [BR:
sgen03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RKE57_14015 (rne)
Ribosome biogenesis [BR:
sgen03009
]
Prokaryotic type
rRNA processing factors
RKE57_14015 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
zf-C2H2_FBX41
SE
Motif
Other DBs
NCBI-ProteinID:
WNF09184
LinkDB
All DBs
Position
3023262..3026522
Genome browser
AA seq
1086 aa
AA seq
DB search
MKRMLINATQAEELRVAIVDGQSLYDIDIEQPSKEQKKSNIYKGRIFRIEPSLEAAFVEY
GGGRHGFLPLKEISRDYFQAGVDHNKAGIRELLKEGQEIVVQVDKEERGNKGAALTTFIS
LAGRYMVLMPNSPSAGGVSRRIEGEDRAALKDALDKLNIPDDMGVIIRTAGVGRDAEELQ
WDLDYLLNVWRAIAEAALSKPAPFLIYQESRLIVRALRDYLRADIGEILVDTEEMYEHAR
EFMQQVMPQTLRKLKHYKDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAV
DVNSSRATKGSDIEDTAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASNKHQREVENR
LANALKYDRARVQVGRISRFGLLEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLSLS
IIRVAEEHAMKENTGQVLVQAPVEIANYLLNEKRSALREIEQRHEAPIVIVADEQLHTPH
YTVTRLRENELGEESNKPSYQRGTPRKLPVHALTKGQLNIPPPAVTQVKHTSPAPVREEV
EPAKAAPAPVAVAPTAPAPSGGVIGWLKRVFGGEPAPAPAPAAPAARQSQDGGRKDRNKD
RNKDRKDRRDDNRGNGNAQQQKDGGNRKDRGEQRKDGRNGNNGNAQPQPQPQQGKQKEPQ
QKDGQQQPQQQNKPRNEQQGQNQNQQQPKLKQPKQPRPQQQDGDKPAEKPQRGAADAPVD
AVTAAAAVAATAAAANGVTAQEATAPVAPVAAAPVDAAVAVETGANEAEVVAVAGEEAAT
DANGEQAGEGATRRRRGRRGGRRRRRGGAENAAGSDALGDDQDEGDDSDDADGAEPNVDS
TAGTAPVAVAQPARSQPEFDFDDEVEPVVADASKPVRAAAAVAAAPVAVVSSAVVEAAAP
VVAEVQAPAEAAAKTEAVSSPVQTSMLDAIDAATPAQPVAAAAPVIEVIAPVTEAQPVAV
EAAPVAEAAPVIEAKPAAVEAAPVVEAKPEIVEATPVVEANPEAVEAAPVVEAKPVVEPV
VAAEQPVVPVAVEAAPIEAAAPVAEAVVTPSIDPVADGHADAAAQAAEAKADEEDEEAAK
RTPPAN
NT seq
3261 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgaatgctgatcaacgccacgcaggctgaagagctgcgtgttgccatcgtggat
ggccagtcgttgtatgacatcgacatcgaacagccgtcgaaggaacagaagaagtccaac
atctacaagggccggatcttccgcatcgagccctcgctggaagcggccttcgtcgagtac
ggtggtggccgccatggcttcctgccgctgaaggaaatctcccgcgactacttccaggcc
ggtgtcgaccacaacaaggccggcatccgcgaactgctgaaggaaggccaggagatcgtc
gtccaggtcgacaaggaagagcgtggcaacaagggcgctgccctgaccacgttcatctcg
ctggccggccgctacatggtgctgatgccgaactcgcccagcgccggcggcgtgtcccgt
cgcatcgaaggcgaagaccgtgccgccctgaaggacgccctggacaagctgaacatcccc
gacgacatgggcgtgatcatccgtaccgccggcgtcggccgcgatgcggaagagctgcag
tgggatctggactacctgctcaacgtctggcgtgccatcgccgaagccgcgctgagcaag
ccggccccgttcctgatctaccaggaatcgcgcctgatcgtgcgcgccctgcgtgactac
ctgcgcgccgacatcggcgagatcctggtggacaccgaggagatgtacgagcacgcccgc
gagttcatgcagcaggtgatgccgcagaccctgcgcaagctcaagcattacaaggacgac
atcccgctgttcaaccgcttccagatcgaatcgcagatcgaaggcgcctacgagcgcaac
gtgcgcctgccgtcgggcggctcgatcgtggtcgaccagaccgaagcgttgaccgccgtc
gacgtgaactcctcgcgcgccaccaagggcagcgacatcgaggacaccgcgttccagacc
aacctggaagcggccgaagaagtggcccgccagctgcgcctgcgtgacctgggcggcctg
gtggtgatcgacttcatcgacatggcctccaacaagcaccagcgcgaagtcgagaaccgc
ctcgccaacgcgctgaagtacgaccgcgcgcgcgttcaggtcggccgcatctcgcgcttc
ggcctgctggaaatgagccgccagcgcctgcgcccgagcctgggcgagtcgagccagatc
gtctgcccgcgttgcgacggccacggccgcatgcgcagcgtcgagtcgctgtcgctgtcg
atcatccgcgtcgccgaagaacatgcgatgaaggaaaacaccgggcaggtgctggtccag
gccccggtggagatcgccaactacctgttgaacgaaaagcgcagcgccctgcgcgagatc
gagcagcgccacgaggcgccgatcgtgatcgtcgccgacgagcaactgcacaccccgcac
tacaccgtcacccgcctgcgcgagaacgagctgggtgaagagagcaacaagcccagctac
cagcgcggcaccccgcgcaagttgccggtgcacgcgctgaccaagggccagctgaacatc
ccgccgccggcggtgacccaggtcaagcacacctcccccgccccggtgcgcgaagaagta
gagccggccaaggcagccccggccccggtcgcggtcgcaccgacggccccggcccccagc
ggcggcgtgatcggctggctcaagcgcgtgttcggtggcgagccggccccggcgccggcg
ccggccgctccggcggcgcgtcagtcgcaggacggtggccgcaaggaccgcaacaaggat
cgcaacaaggaccgcaaggaccgtcgcgacgacaatcgtggcaacggcaacgcgcagcag
cagaaggacggcggcaaccgcaaggaccgcggtgagcagcgcaaggatggccgcaacggc
aacaacggcaatgcccagccgcagccgcagccgcagcagggcaagcagaaggagccgcag
cagaaggatggccagcagcagccgcagcagcagaacaagccgcgcaacgagcagcagggc
cagaaccagaaccagcagcagccgaagctgaagcagcccaagcagccgcgtccgcagcag
caggacggcgacaagccggccgagaagccgcagcgcggtgccgccgatgcaccggtcgac
gccgtgaccgcggcagcagcagtggccgccacggccgccgccgccaatggggtgaccgca
caggaagccactgcaccggtcgccccggtggccgccgctccggtggacgccgcagtagcg
gtcgagaccggtgccaacgaggccgaggtggttgcggttgccggtgaagaggccgcaacc
gacgccaatggcgagcaggcaggcgaaggcgcgacccgccgtcgccgtggccgtcgtggt
ggccgtcgtcgtcgtcgcggtggcgccgagaacgccgccggcagcgacgctctgggtgat
gaccaggacgagggtgatgacagtgatgacgccgacggcgccgagccgaacgtcgacagt
actgccggcactgcgccggtcgctgttgcgcagccggcccgttcgcagccggagttcgac
ttcgatgacgaagtcgagccggtcgttgccgacgcctcgaagccggtccgtgctgccgcc
gccgttgccgccgcaccggttgccgtggtgagcagcgccgtggtcgaagccgccgccccg
gtcgtggctgaagtgcaggccccggccgaagctgctgcgaagaccgaagcggtgtcctcg
ccggtgcagaccagcatgctcgatgccatcgacgccgcgaccccggcccagccggtagcc
gctgccgcgccggtgatcgaagtcattgcgccggtgaccgaagcacagccggtcgcggtt
gaagcagccccggtggctgaagccgctccggtgatcgaagcgaagccggcggcggtcgaa
gctgcgccggtggttgaagccaagccggagatcgtcgaagccactccggtggttgaagcc
aatccggaggccgttgaggctgcgccggtggttgaagccaagccggtcgttgagcccgtc
gtggccgccgaacagccggtcgttccggtggcggtggaagccgcgccgatcgaagccgct
gccccggtcgccgaagcggtggtgacgccgtcgatcgacccggtcgccgatggccatgcc
gacgctgcagcccaggctgcagaagccaaggccgatgaagaagacgaagaggccgccaag
cgcacgccgccggcgaactga
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