Stenotrophomonas geniculata: RKE57_14440
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Entry
RKE57_14440 CDS
T09411
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
sgen
Stenotrophomonas geniculata
Brite
KEGG Orthology (KO) [BR:
sgen00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sgen03016
]
RKE57_14440 (rnd)
Enzymes [BR:
sgen01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
RKE57_14440 (rnd)
Transfer RNA biogenesis [BR:
sgen03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
RKE57_14440 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
DNA_polI_exo1
Motif
Other DBs
NCBI-ProteinID:
WNF09263
LinkDB
All DBs
Position
3119653..3120732
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AA seq
359 aa
AA seq
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MATWITTPAELDAYFQQRPTRIGLDTEFIRERTFWPQLALVQMAVGQDILLIDPLIPGMT
EALAPWLADESITKVMHSASEDLVAFKWACGVLPRPLFDTQIGAALAGIGGGMGYQKLVA
EITGVALAKGETRSDWMRRPLSESQLQYAADDVEHLFALHDAIDAKLQTLGRQQWLHDDG
ERLLASVANDEDRWPHLAMRSAQFLDAAAQHRLLRLLRWRDVQARSSDRPRSWILDNELA
ATLARTPPADETALGRLFEQFPKAPRKLAGAVWQALSTPLADEAEAPLALPANDSNKQVV
KKLQDAVTERSRELGLPDGVLASRKHLESYLERRQWPAALAGWRQQELESRLQALLPAR
NT seq
1080 nt
NT seq
+upstream
nt +downstream
nt
gtggcaacctggatcaccacccccgccgagctggatgcgtacttccagcagcgcccgacc
cgcatcggcctggacaccgaattcatccgtgaacgcaccttctggccgcagctggccctg
gtgcagatggcggtcgggcaagacatcctgctgatcgacccgctgattcccggcatgacc
gaggcgctggcaccgtggctggccgatgaatccatcaccaaggtgatgcacagcgccagc
gaagacctggtcgccttcaagtgggcgtgcggcgtgctgccgcgaccactgttcgacacc
cagatcggtgccgcgctggccggcatcggcggcggcatgggctaccagaagctggtggcg
gaaatcaccggcgtcgccctggccaagggcgaaacccgttcggactggatgcgccgcccg
ctttcggagtcgcagctgcagtacgccgccgacgatgtcgagcacctgttcgcgctgcat
gacgccattgatgccaagctgcagacgcttggccgccagcagtggctgcacgacgatggc
gagcgcctgctggccagcgtcgccaacgacgaggaccgctggccgcatctggcgatgcgc
tcggcgcagttcctcgacgcggcggcacagcaccgcctgctgcgcctgctgcgctggcgt
gatgtgcaggcgcgcagcagcgaccgcccgcgaagctggatcctggacaacgaactggcc
gccaccctggcgcgcacgccaccggccgacgagactgcactgggcaggctgttcgagcag
ttcccgaaggcgccgcgcaagcttgcaggcgcggtctggcaggcactgtccacgccgctg
gccgatgaggccgaggcaccgctggcactgcccgccaacgacagcaacaagcaggtagtg
aagaagctgcaggacgcggtgaccgaacgcagccgcgagctgggcctgccggatggcgtg
ctggcctcccgcaagcatctggaaagctatctggaacgccgccaatggccggccgcactg
gccggctggcgccagcaggaactggagtcgcggctgcaggcgttgctgcccgcacgttga
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