Stenotrophomonas geniculata: RKE57_14695
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Entry
RKE57_14695 CDS
T09411
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
sgen
Stenotrophomonas geniculata
Pathway
sgen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sgen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RKE57_14695 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgen03019
]
RKE57_14695 (pnp)
03016 Transfer RNA biogenesis [BR:
sgen03016
]
RKE57_14695 (pnp)
Enzymes [BR:
sgen01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
RKE57_14695 (pnp)
Messenger RNA biogenesis [BR:
sgen03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
RKE57_14695 (pnp)
Transfer RNA biogenesis [BR:
sgen03016
]
Prokaryotic type
tRNA degradation factors
RKE57_14695 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
KH_2
KH-I_KHDC4-BBP
OB_RRP5_4th
DUF7680
KH_KhpA-B
S1_2
KH_5
Phage_tube
Motif
Other DBs
NCBI-ProteinID:
WNF09309
LinkDB
All DBs
Position
complement(3159708..3161816)
Genome browser
AA seq
702 aa
AA seq
DB search
MAKITKTFQYGKHTVTLETGEVARQASGAVIVKMDDTVLLVTAVAAKSAREGQDFFPLTV
DYQEKFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSLN
PDVDGDIPALIGASAALALAGTPFMGPIGAAKVGYKNGEYILNPTVSELADSQLELVVAG
TSNAVLMVESEAALLSEEVMLGAVTFGHREMQKVINAINELTVEAGTKPSTWEAPAKNDA
LIAALKEAIGPRLGEAFQVRDKLQRRDAISAIKKDVVEALAGRVAAEGWNPAELSKEFGE
LEYRTMRDSVLDTKVRIDGRALDTVRPITVKTGVLPRTHGSSLFTRGETQAIVTITLGTA
RDGQVIDAVAGEYKENFLFHYNFPPFSVGECGRMMGPKRREIGHGRLAKRGVLAVMPSLE
AFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEGERFVVLS
DILGDEDHLGDMDFKVAGTAEGISALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMAH
GLTAPREELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIVIAS
VNAIAAQAAKARIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSDRV
EKVGDVLKEGDVVKVKVLEVDKQGRIRLSMKAVEEGDAVSAE
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
gtggcaaaaatcaccaaaaccttccagtacggcaagcacaccgtcacgctcgagaccggc
gaagtcgcccgtcaggccagcggtgccgtcatcgtcaagatggacgacaccgtactgctg
gtcaccgccgtcgccgccaagagcgcgcgcgaaggccaggacttcttcccgctgaccgtc
gattatcaggaaaagttctacgccggcggccgtatcccgggtggtttcttcaagcgtgaa
ggccgtgcgaccgagaaggaaaccctgatctcgcgtctgatcgaccgtccgatccgcccg
ctgttccccgaagactacaagaacgaagtgcagatcatcgccacggtcatgtcgctgaac
ccggacgtggacggtgacatcccggccctgatcggcgcctcggctgccctggccctggcc
ggcaccccgttcatggggccgatcggcgctgccaaggtcggttacaagaacggcgagtac
atcctgaacccgaccgtcagcgaactggctgactcgcagctggaactggtcgtcgccggc
acctccaacgccgtgctgatggttgaatccgaagctgcgctgctgtccgaagaagtgatg
ctgggcgccgtgaccttcggtcaccgcgagatgcagaaggtcatcaacgcgatcaacgag
ctgaccgtcgaagccggtaccaagccgtcgacctgggaagccccggccaagaacgacgcg
ctgatcgccgccctgaaggaagccatcggcccgcgcctgggcgaagccttccaggtgcgc
gacaagctgcagcgccgcgacgccatctcggcaatcaagaaggacgtggtcgaagccctg
gcaggccgcgtggccgccgaaggctggaacccggccgagctgtcgaaggaattcggcgag
ctggaataccgcaccatgcgtgactcggtgctggacaccaaggtgcgcatcgacggccgt
gcgctggacaccgtccgcccgatcaccgtgaagaccggcgtgctgccgcgtacccacggc
tcctcgctgttcacccgcggcgaaacccaggccattgtgaccatcaccctgggcaccgcc
cgtgacggccaggtcatcgacgccgttgccggtgagtacaaggaaaacttcctgttccac
tacaacttccctccgttctcggtgggtgagtgcggccgtatgatgggcccgaagcgccgc
gaaatcggccacggtcgcctggccaagcgcggcgtgctggctgtcatgccgtcgctggaa
gccttcccgtacaccatccgcgtcgtctcggaaatcaccgagtcgaacggttcctcgtcg
atggcctcggtctgcggttcctcgctggccctgatggacgccggcgtgccggtgaaggca
ccggttgccggtatcgccatgggtctggtcaaggaaggcgagcgcttcgtcgtcctgtcc
gacatcctgggtgacgaagatcacctgggcgacatggacttcaaggtggccggtaccgct
gagggcatctccgccctgcagatggacatcaagatcgaaggcatcaccgaagagatcatg
aagcaggccctgcagcaggccaaggctggccgtctgcacatcctgggcgaaatggcccac
ggtctgaccgctccgcgtgaagagctgtcggactacgcgccgcgcctgctgaccatcaag
atccacccggacaagatccgcgaagtgatcggcaagggtggttcgaccatccaggccatc
accaaggaaaccggcacccagatcgacatccaggatgacggcaccatcgtcatcgcatcg
gtcaacgccatcgctgcccaggccgccaaggcccgcatcgagcagatcacctcggacgtc
gagccgggccgcatctacgaaggcaaggtcgccaagatcatggacttcggtgcgttcgtc
acgatcctgccgggcaaggacggtctggtccacgtgtcgcagatctccagcgatcgcgtc
gagaaggtcggcgacgtgctgaaggaaggcgatgtggtcaaggtcaaggtgctggaagtc
gacaagcagggccgtatccgcctgtcgatgaaggccgtggaagaaggcgacgccgtcagc
gccgaataa
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