Stenotrophomonas geniculata: RKE57_18575
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Entry
RKE57_18575 CDS
T09411
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
sgen
Stenotrophomonas geniculata
Pathway
sgen02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
sgen00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
RKE57_18575 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sgen03021
]
RKE57_18575 (rpoD)
Transcription machinery [BR:
sgen03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
RKE57_18575 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
WNF10048
LinkDB
All DBs
Position
complement(4048680..4050533)
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AA seq
617 aa
AA seq
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MANERPAQSEIKQLISKGLEQGYLTYAEVNDHLPDDMVDPEQIEDIIGMINGMGIDVHEV
APDVETLLLNDGNTGNREVDDTAAEEAAAALSALDTEGGRTTDPVRMYMREMGTVELLTR
EGEIAIAKRIEEGLSQVQAALGQFPVSVESLLTDYEAHKEGKKRLAEVIVGFNDLTDEEP
APPAAAADDSADADAEGDEDEDDDVDGGDEEAAPTGPDPEEVAARMQALSDAFNAFKKAA
TKGDKKNLPRLREEMSAVFVTLKLPLPLTDVLTKQLRDTMASIKAHERRVLNLATVTARM
PRKDFIRSWEGNQTNLEWVEDALKRKQKWSSALREVKDQIIAEQQATIDIEKLTQLDLEE
LKEISRAMAYGEAKARKAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD
KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQQYGRE
ATPEELAKEMDMPEDKIRKVMKIAKEPISMETPIGDDEDSHLGDFIEDTNVESPIENTTN
INLSETVRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRK
LRHPSRSEQLRSFLDID
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atggccaacgaacgtcctgcccaatccgaaatcaagcaactgatcagcaagggcctggaa
cagggctacctgacctacgccgaagtcaatgaccatctgccggacgatatggtcgacccg
gaacagatcgaagacatcatcggcatgatcaacggcatgggcatcgatgtccatgaagtt
gcgccggatgtggaaaccctgcttctcaacgacggcaacaccggtaaccgcgaagtcgat
gacaccgcggccgaagaagccgccgccgcactgagcgcgctcgacaccgaaggtggccgt
accaccgacccggtgcgcatgtacatgcgcgaaatgggcaccgtcgagctgctgacccgc
gaaggcgaaatcgccatcgccaagcgcatcgaggaaggcctttcgcaggtccaggcggcc
ctgggccagttcccggtctcggtcgagtcgctgctgaccgactacgaagcccacaaggaa
ggcaagaagcgcctggccgaagtgatcgtcggcttcaacgatctgaccgatgaagagccg
gcaccgccggcggccgctgccgatgacagcgccgatgccgacgccgaaggcgacgaggac
gaggacgacgatgtcgacggtggcgatgaagaagccgcaccgaccggtccggatccggag
gaagtcgccgcgcgcatgcaggcgctgagcgatgccttcaacgccttcaagaaggccgcg
accaagggcgacaagaagaacctgccgcgcctgcgcgaagaaatgtcggcggtgttcgtc
accctgaagctgccgctgccgctgaccgatgtgctgaccaagcagctgcgcgacaccatg
gcgtcgatcaaggcccatgagcgccgcgtgctgaacctggccaccgtcactgcacgcatg
ccgcgcaaggacttcatccgttcctgggaaggcaaccagaccaacctggagtgggtggaa
gacgcactgaagcgcaagcagaagtggtcgtcggccctgcgcgaagtgaaggaccagatc
atcgccgaacagcaggcgacgatcgacatcgagaagctgacccagctggacctggaagag
ctgaaggaaatcagccgtgccatggcctacggtgaagccaaggcgcgcaaggccaagaag
gaaatggtcgaggccaacctgcgcctggtgatctcgatcgccaagaagtacaccaaccgc
ggcctgcagttcctggacctgatccaggaaggcaacatcggcctgatgaaggccgtggac
aagttcgagtaccgccgcggttacaagttctcgacctacgccacctggtggatccgccag
gcgatcacccgctcgattgccgaccaggcgcgcaccatccgtattccggtgcacatgatc
gagacgatcaacaagttgaaccgcatttcccgccagatgctccagcagtacggccgcgag
gctacgccggaggagctggccaaggaaatggacatgccggaagacaagatccgcaaggtg
atgaagatcgccaaggagccgatctcgatggaaaccccgatcggcgacgacgaggattcc
catctgggcgacttcatcgaggacaccaacgtggagtccccgatcgagaacaccaccaac
atcaacttgtctgaaaccgtgcgcgacgtgctggccggcctcaccccgagggaagccaag
gtgctgcgcatgcgcttcggcatcgacatgaacaccgaccacacccttgaggaagtcggc
aagcagttcgacgtgacccgcgagcgcatccgccagatcgaagcgaaggccctgcgcaag
ctgcgtcacccgagccgctcggagcagctgcgcagcttcctggatatcgattga
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