Stenotrophomonas geniculata: RKE57_20305
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Entry
RKE57_20305 CDS
T09411
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sgen
Stenotrophomonas geniculata
Brite
KEGG Orthology (KO) [BR:
sgen00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sgen03016
]
RKE57_20305
Enzymes [BR:
sgen01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
RKE57_20305
Transfer RNA biogenesis [BR:
sgen03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
RKE57_20305
Prokaryotic type
tRNA splicing ligases
RKE57_20305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Hexapep
Motif
Other DBs
NCBI-ProteinID:
WNF10371
LinkDB
All DBs
Position
4418234..4419454
Genome browser
AA seq
406 aa
AA seq
DB search
MDTQQNYQWLHAEGTTPIKGWVNGVPLEAQAHEQLRNIAAIPFVGPWVAVMPDVHLGKGA
TVGSVIPTRGAIIPAAVGVDIGCGMAAVRTTLRANDLPDDLRQLRNSIERSIPVGNGRGG
EHRRMPDSIHTRLVQSGLANGLEKIKDKHRRIRTDKLDRQLGTLGGGNHFIELCLDETDT
VWVMLHSGSRGTGNLIGTYFIEKAREELARRVLGFHLPDKDLAFFMEGEPLFDDYVEAVS
WAQDYARQNREAMMSRVLAEMRHRLPKFQLAAMAVNCHHNYVQKETHHGQELLVTRKGAV
SAREGELGIIPGSMGTRSYIVRGKGSADSFHSCSHGAGRAMSRGAARQQITLAQHREATA
HVECRKDSGVLDESPAAYKSIDDVMAAQLDLVDVVHTLRQVLCVKG
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atggacacgcaacagaactatcaatggctgcacgccgagggcaccacgccgatcaagggc
tgggtcaacggtgtgccgctggaggcacaggcccacgagcagctgcgcaacatcgccgcg
atcccgttcgtcgggccgtgggtggcggtgatgcccgacgtgcacctgggcaagggcgcg
accgtgggctcggtgatcccgacccgtggcgcgatcattccggccgcggtcggcgtcgac
atcggctgcggcatggcggcggtgcgtaccacgctgcgcgccaacgacctgcccgatgac
ctgcggcaactgcgcaacagcatcgagcgcagcatcccagtcggcaacgggcgcggcggc
gagcatcgccgcatgcccgacagcatccacacccggttggtgcagtccgggctggccaac
ggcctggagaagatcaaggacaagcaccgcaggatccgcaccgataagctggaccgccag
ctgggtacgctgggcggcggcaaccacttcatcgaactgtgcctggacgagacggatacg
gtgtgggtgatgctgcacagcggctcgcgcggcaccggcaacctgatcggcacctacttc
atcgagaaggcgcgcgaggagctggcacggcgcgtgctgggcttccacctgccggacaag
gacctggcgttcttcatggaaggcgagccgctgttcgatgactacgttgaagcggtgtcg
tgggcgcaggactacgcgcggcagaaccgcgaggcgatgatgtcgcgcgtgctggccgag
atgcgccaccgcttgccgaagttccagctggcggcgatggcggtgaactgccaccacaac
tacgtgcagaaggaaacgcatcacggccaggagctgctggtgacacgcaagggcgccgtc
agcgcgcgcgagggcgaactgggcatcattcccggcagcatgggcacgcgcagctacatc
gtgcgcggcaagggcagcgcggacagcttccacagctgcagccacggtgccggccgggcg
atgagccgtggcgcggcgcgccagcagatcacgctggcccagcaccgcgaggccaccgca
cacgttgagtgccgcaaggacagcggcgtgctggacgagtcaccggcggcgtacaagtcg
atcgatgatgtcatggccgcccagctggacctggtggacgtggtgcacacactgcggcag
gtgctgtgcgtgaaagggtaa
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