Stenotrophomonas geniculata: RKE57_20560
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Entry
RKE57_20560 CDS
T09411
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
sgen
Stenotrophomonas geniculata
Pathway
sgen03030
DNA replication
sgen03410
Base excision repair
sgen03420
Nucleotide excision repair
sgen03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sgen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RKE57_20560 (polA)
03410 Base excision repair
RKE57_20560 (polA)
03420 Nucleotide excision repair
RKE57_20560 (polA)
03440 Homologous recombination
RKE57_20560 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sgen03032
]
RKE57_20560 (polA)
03400 DNA repair and recombination proteins [BR:
sgen03400
]
RKE57_20560 (polA)
Enzymes [BR:
sgen01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RKE57_20560 (polA)
DNA replication proteins [BR:
sgen03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RKE57_20560 (polA)
DNA repair and recombination proteins [BR:
sgen03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
RKE57_20560 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RKE57_20560 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
Motif
Other DBs
NCBI-ProteinID:
WNF10421
LinkDB
All DBs
Position
complement(4474678..4477452)
Genome browser
AA seq
924 aa
AA seq
DB search
MSRLVLIDGSSYLYRAFHALPPLSNAQGEPTGALFGVVNMLRSTLKERPAYVAFVVDAPG
KTFRDDLYDQYKANRPPMPDELRSQVEPMCRIVEALGISILRIPGVEADDVIGTLALQGV
AQDLKVTISTGDKDFAQLVRPGIELVNTMTGSRMDSDAAVMEKFGVRADQIIDLLALMGD
TVDNVPGVEKCGPKTAAKWLAEYQHLDGVMAAAPTMKGKIGENLRAALERLPLNRELVTI
RTDVELDASPTMLALREQDVPELTELYARYGFTQALKELGAPLPAPTAASEATPSLRGTA
AGFARGSAEAPAAGTLDPALAAPGEYETVLTAEQLQAWVERLQQADLISFDTETDALDAM
RARLVGVSLAVEPGKAAYIPVGHDYPGAPAQLPMQQVLDALRPMLQDPAKKKLGQHGKYD
LHVLRRHGVDVQGYHDDTMLESFVLNSTATRHDMDSLALRYLGYSTIKFEDVAGKGAKQI
PFSQVGIDEASRYAAEDADITLRLHRALQPQLLAEPALDSVYRDIEMPLVPVLTSIEANG
VRVDTDELRRQSQDLSSRMLAAQQKATELAGRSFNLDSPKQLQAVLFDELKLPAVVKTPK
GQPSTNEEALEAIADQHELPRVILEYRGLAKLRSTYTDKLPEMVNPDTGRVHTSYHQSGA
ATGRLSSSDPNLQNIPIRTEDGRRIRRAFIAPEGFQLLAADYSQIELRIMAHLSEDPGLV
RAFEQGADVHRATAAEVFGRTLEEVTPNERRAAKAINFGLMYGMSAFGLARNLGIDRGQA
QDYVALYFSRYPGVRDFMERMRQQARDQGYVETLFGRRLYLNDIHARNQGLRAGAERAAI
NAPMQGTAADIIKRAMVDVDQWLRDSGAPARMILQVHDELVFETESSFVEDLRLQVVERM
SQAAKLRVPLVVDTGIGNNWDEAH
NT seq
2775 nt
NT seq
+upstream
nt +downstream
nt
atgagcagattagtcctgatcgacgggtccagttacctgtaccgcgcgttccacgcgctg
ccgcccctgtccaatgcacagggcgaacccaccggtgcgctgttcggcgtggtcaacatg
ctgcgctcgacactgaaggagcgcccagcctacgtggcgttcgtggtcgatgcgcccggc
aagaccttccgcgatgacctgtacgaccagtacaaggccaaccgcccgccgatgcccgat
gagctgcgcagccaggtcgagccgatgtgccgcatcgtcgaggcgctgggcatcagcatc
ctgcgcatccccggcgtggaagccgacgatgtgatcggcacgctggccctgcagggcgtg
gcgcaggacctgaaggtgaccatctccaccggcgacaaggactttgcccagctggtgcgc
ccgggcatcgagctggtcaacaccatgaccggcagccgcatggattcggacgcggcggtg
atggagaagttcggcgtgcgcgccgaccagatcatcgacctgctggcgctgatgggcgat
accgtcgacaacgtgccgggcgtagagaagtgcgggccgaagaccgccgccaagtggctg
gccgagtatcagcacctggatggggtgatggcggccgcgccgaccatgaagggcaagatc
ggcgagaacctgcgggcggcgctggagcggctgccgctgaaccgcgagctggtgaccatc
cgcaccgacgtggagctggacgccagcccgaccatgctggccctgcgcgagcaggacgtg
ccggagttgaccgagctgtatgcgcgctacggcttcacccaggcgctgaaggagctgggt
gcaccgctgccggcgccgacggccgccagcgaagcaacgccgagcctgcgcggtacggca
gcaggctttgcccgcggcagcgccgaggcaccggcagcgggcacgctggatccggcgctg
gccgcgccaggtgaatacgagaccgtgctgaccgccgagcagctgcaggcctgggtcgag
cgcctgcagcaggcggacctgatcagcttcgataccgaaaccgatgcgctggacgcgatg
cgtgcgcgcctggtcggcgtcagtctggcggtcgagccgggcaaggccgcctacattccg
gtcggccacgattacccgggtgcgccggcccagctgccgatgcagcaggtgctggatgcg
ctgcgcccgatgctgcaggacccggcgaagaagaagctgggccagcacggcaagtacgac
ctgcacgtgctgcgccgtcacggcgtggacgtgcagggctaccacgacgacaccatgctc
gagagcttcgtgctcaattccaccgccacccgccacgacatggattcgctggccctgcgt
tacctgggctacagcaccatcaagttcgaggacgtggccggcaagggcgccaagcagatt
ccgttctcgcaggtgggcatcgacgaagccagccgctatgcggccgaggatgccgacatc
accttgcgcctgcaccgcgcgctgcagccgcagctgctggccgaaccggcactggacagc
gtgtaccgcgacatcgagatgccgctggtgccggtgctgaccagcatcgaagccaacggc
gtgcgggtcgacaccgacgaactgcgccggcagagccaggacctgtcctcgcgcatgctg
gcggcgcagcagaaggccaccgaactggctgggcgcagcttcaacctggattcgcccaag
cagctgcaggcggtgctgttcgacgagctgaagctgccggcggtggtgaagaccccgaag
ggccagcccagcaccaatgaagaggcactggaggcgattgccgaccagcacgagctgccg
cgcgtgatcctggagtaccgcgggctggccaagctgcgcagcacctacaccgacaagctg
ccggagatggtcaacccggacaccggccgcgtgcataccagctaccaccagtccggcgcc
gccaccggccgcctgtcctcgtcggaccccaatctgcagaacatcccgatccgcaccgaa
gatggccgccgcatccgccgcgcgttcatcgccccggagggcttccagctgctggccgcc
gactactcgcagatcgagctgcggatcatggcccacctgtccgaggacccgggtctggtg
cgtgccttcgagcagggcgccgacgtgcaccgtgccaccgccgccgaggtgttcgggcgc
acgctggaggaggtgaccccgaacgagcgccgtgccgccaaggcgatcaacttcggcctg
atgtacggcatgagcgccttcggcctggcccgcaacctgggcatcgaccgcggccaggcc
caggactacgtggcgctgtacttcagccgctacccgggcgtgcgtgacttcatggagcgg
atgcgccagcaggcccgcgaccagggctatgtggagaccctgttcggccgccgcctgtac
ctgaacgacattcatgcacgtaaccagggcctgcgtgccggtgccgagcgcgctgcgatc
aatgcgccgatgcagggcaccgccgccgacatcatcaagcgcgcgatggtggatgtggac
cagtggctgcgcgacagcggggcaccggcacggatgatcctgcaggtgcacgatgaactg
gtcttcgaaaccgaaagtagtttcgttgaagacttgcgtttgcaggtggtggagcgcatg
tcgcaagcggccaaactgcgggtgccgctggtggtcgataccggcatcggcaacaactgg
gacgaagcgcactga
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