Stenotrophomonas geniculata: RKE57_20990
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Entry
RKE57_20990 CDS
T09411
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
sgen
Stenotrophomonas geniculata
Pathway
sgen03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sgen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
RKE57_20990 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sgen03400
]
RKE57_20990 (recB)
Enzymes [BR:
sgen01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
RKE57_20990 (recB)
DNA repair and recombination proteins [BR:
sgen03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
RKE57_20990 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
AAA_22
AAA_11
Motif
Other DBs
NCBI-ProteinID:
WNF10493
LinkDB
All DBs
Position
complement(4578405..4582085)
Genome browser
AA seq
1226 aa
AA seq
DB search
MSTAIAEDGIESLSRDPYLTLPLDGIRLIEASAGTGKTFTLATLFTRLVVEQGLRIGQIL
AVTFTDAATQELRKRIRERLALAARLVDLEPAEGEAPDVRLTREVLQRHLHEGSESAAAL
KRRLQVAADEIDLASIFTIHGFCTRVLREHALESGHTFDPPELLASDRELLEELAADLWR
VHANDPVTLEPLTWLWSNPDALAADLRALLGTPPLHPLPQPVTLADPHPALQSAAEALSA
SVREHGEQFFIDLCDAVDNKWLNGVSYKLGWLHPLGRQLLAWAERADPRELLISERLPAL
LPEALAAKTNKKFAERTPSSPLQAPLARYVVLLAERDAWLRATALNFLHALRADATQRLL
ALKRIRRVQTYDDLIDGVALALEGPQRLTLVRQLRAQYRIALVDEFQDTDDRQWGIFHTV
FGDSPEVRELGLAPALFLIGDPKQAIYGFRGGDIHTYLKAKQVAQQAPVLDQNFRSRPAV
LRALQALYDNAGEDAFLERDIQFEPVRPGGVRSDADYQRDGHAAAALTLRVLRSGGDKAM
SADASRDAATQACVAAIHQILVEARAGNAVLRGRPVQPGDIAVLVRSHREATLVQRALAA
VGIPAVAAGKQSLFSTPEARDLRALLLALLQPADEGRLRAALATVLLGQRASAIAAMERE
GDLQRGFQAQLLHWRERWQRGGPFAVIADVCAAQGERLLALIDGERRLTNYLQLGELLQE
ASAQALGMHGLLDWLQGQMASADQDDEQQLLRLESDARRVQIITLHKSKGLEYPLVFLPF
VGIDGGAPNTASHCTVHVGGQRQLHWKLDKDEAWEVATAQREREQRAEDARLLYVGLTRA
EHALWIAVGDLAGLGKTRLAPLLGDLQALRALADVHIDDSEAPATLPQLAAEVEGELPAV
RALTRRVPHDWWVYSFTQLAHADAGVGSDIEAAATELPAPAADEPAGPELPLEPALPEPT
AAAEDNAPLDPRFMGSRFGNVLHEAMENVDFAAWADWQPGLEAPEGQAEVLRKALHDEGY
ADVDLDDGVAVLVPLVGHTLTVPLPEGGALHSLGEGERRAEIDFHFAIEPTTVPALLQVL
HAHGVSSGRRGFGQRRRLEGLMTGMIDLTYVRDGRWYVLDYKSNRLPGYSPDLLAIAMRH
SEYDLQALIYTVALHRWLRFRLGAAYDYERDMGGIRYLFCRGLDGTGNGVHVDRFPLALV
DALDALFAGGEQAQAELAARARGASA
NT seq
3681 nt
NT seq
+upstream
nt +downstream
nt
atgagcaccgccatcgccgaagacggcatcgaatccctcagccgtgatccctacctgacc
ctgccgctggacggcatccgcctcatcgaagccagcgccggcaccggcaagaccttcacc
ctggccacgctgttcacccgcctggtggtggagcagggcctgcgcatcggccagatcctg
gcagtgaccttcaccgacgccgctacccaggaactgcgcaagcgcatccgcgagcgcctg
gcgctggccgcacgcctggtcgatctggaaccggccgagggcgaagcgccggacgtgcgc
ctcacccgcgaggtgctgcagcgtcatctgcacgagggcagcgaaagcgccgccgcattg
aaacgccgcctgcaggtggccgcagacgagatcgatctggcgtccatcttcaccatccac
ggcttctgcacccgcgtgctgcgcgagcatgcgctggagagcggccataccttcgatccg
ccggaactgctggccagtgaccgcgagctgctggaggagctggcggccgacctgtggcgg
gtgcacgccaacgacccggtcacgctggagccgctgacctggctgtggtccaacccggac
gcgctggccgccgatctgcgcgcgttgctgggcacgccaccgctgcatccgctgccacag
ccggtgacactggccgatccacacccggcattgcagagcgcggcagaagcactgtccgca
agcgtgcgcgagcatggcgagcagttcttcatcgacctctgcgatgcggtcgacaacaag
tggctcaacggcgtgtcctacaagttgggttggctgcatccgctgggccggcagctgctg
gcctgggccgagcgcgccgacccgcgcgagctgctgatcagcgaacgcctgccggcgctg
ctgccggaggcgttggccgccaagaccaacaagaaattcgccgagcgcacgccgtcgtcg
ccattgcaggcaccgctggcgcgctatgtcgtgctgctggccgaacgcgatgcctggttg
cgtgccaccgcattgaatttcctgcacgcgcttcgcgccgacgccacgcagcggctgctg
gcactgaagcgcatccgccgggtgcagacctacgacgatctgatcgatggcgtagcgctc
gccctggaaggcccgcagcgactgacgctggtcaggcagctgcgcgcgcagtaccgcatc
gcgctggttgatgagttccaggataccgacgatcgccagtggggcatcttccacaccgtg
ttcggtgattcgccggaggtgcgcgagctgggcctggcaccggcgttgttcctgattggc
gaccccaagcaggcgatctacggtttccgcggcggtgatatccacacttacctgaaggcc
aagcaggtggcgcagcaggcgccggtgctggaccagaacttccgctcgcgacccgctgtg
ctgcgcgcgctgcaggcgctgtacgacaacgccggcgaagacgccttcctcgaacgcgac
atccagttcgagccggtgcggcccggtggcgtgcgcagcgatgcggactaccagcgcgac
ggccatgccgccgcggcgctcaccctgcgcgtgctgcgcagtggcggtgacaaggcgatg
agcgccgatgcctcgcgcgatgcggcgacccaggcctgcgtggccgcgattcaccagatc
ctggtcgaggcgcgtgcgggcaatgccgtgttgcgtgggcgcccggtgcagcccggtgac
atcgcggtgctggtgcgctcgcatcgcgaggccaccctggtgcagcgcgcactggccgcg
gtcggcattccggcagtggcagccggcaaacagagcctgttttccacgcctgaagcgcgt
gatctgcgtgcgctgctgctggcactgctgcaaccggccgacgagggccgcctgcgcgca
gcgctggccacggtactgctcggccagcgcgcaagtgcgattgcggcgatggaacgcgag
ggcgacctgcaacgcgggttccaggcgcagctgctgcactggcgagagcgctggcagcgc
ggcgggccgttcgcggtgatcgccgatgtctgtgccgcgcagggcgagcgtctgctggcg
ctgatcgatggcgagcgccgcctcaccaattacctgcagctgggtgaactgctgcaggaa
gcctccgcgcaggcgctgggcatgcacgggctgctggactggttgcaggggcagatggcc
agcgccgaccaggatgacgagcagcagctgctgcgcctggaatcggacgcgcgccgcgtg
cagatcatcaccctgcacaagagcaagggcctggagtatccgctggtgtttctgcccttc
gtcggcatcgacggcggcgcaccgaacacggcctcgcactgcaccgtgcacgtcggcggc
cagcgccagttgcactggaagctggacaaggacgaggcctgggaagtggccaccgcgcag
cgcgaacgcgagcagcgcgccgaggatgcgcgcctgctgtatgtgggactgacccgcgcc
gagcatgcgctgtggatcgccgtgggtgatctggccgggctcggcaagacgcggctggcg
ccgctgctgggtgacctgcaggcgctgcgcgcgctcgccgatgtgcacatcgatgacagc
gaggcgccggccacgctgccgcagctggcggccgaagtggaaggtgagcttccagccgtg
cgtgcactgacccggcgcgtgccgcacgactggtgggtgtacagctttacccagctggcc
cacgcagatgcaggcgttggcagcgatatcgaagcggccgcgaccgagctgccggcaccg
gccgccgacgaaccggccggcccggaactgccattggaaccggcgctgcctgaacccacc
gcggccgccgaggacaacgccccgctcgatccgcgcttcatgggcagtcgcttcggcaac
gtgctgcatgaggcgatggagaacgtcgactttgctgcctgggctgactggcagccgggc
ctggaagcccctgaggggcaggccgaggtgctgcgcaaggcgctgcacgacgaaggctat
gccgatgtcgatctggacgacggcgtggccgtgctggtgccgctggttggccacacgctg
accgtgccgctacctgaaggcggtgcgctgcacagcctgggtgaaggcgagcgccgcgca
gaaatcgacttccatttcgccatcgaaccgaccacggtgccggcgctgctgcaggtcctt
catgcgcacggcgtttccagtggtcgtcgaggcttcggccagcgtcgccgcctggaaggg
ctgatgaccggcatgatcgacctgacctacgtgcgcgacgggcgctggtacgtgctcgac
tacaagtccaaccgcctgcccggctacagcccggacctgctggccattgccatgcggcac
agcgagtacgacctgcaggcgctgatctacaccgtggccctgcatcgctggttgcgcttc
cgcctgggcgcggcctacgactacgaacgtgacatgggcggcatccgctacctgttctgc
cgcggcctggatggcaccggcaatggcgtgcatgtggaccgtttcccgctggcgttggtg
gatgccctggatgcgttgttcgccggtggcgagcaggcccaggccgaactggccgcacgt
gcgcggggggccagcgcatga
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