Streptomyces griseofuscus: HEP81_03438
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Entry
HEP81_03438 CDS
T07010
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sgf
Streptomyces griseofuscus
Brite
KEGG Orthology (KO) [BR:
sgf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sgf03016
]
HEP81_03438
Enzymes [BR:
sgf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
HEP81_03438
Transfer RNA biogenesis [BR:
sgf03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
HEP81_03438
Prokaryotic type
tRNA splicing ligases
HEP81_03438
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QNT93743
UniProt:
A0A3R8QB31
LinkDB
All DBs
Position
complement(3840231..3841424)
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AA seq
397 aa
AA seq
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MSYVEMPGARTPIRMWADPATVEEGALRQLQNVATLPWIKGLAVMPDVHYGKGATVGSVI
AMRGAVCPAAVGVDIGCGMSAVKTSLTANDLPGDLSRLRSKIEQAIPVGRGMHDDPIEPG
GFHGLATSGWDEFWGRFDGVAEAVHFRQGRATKQMGTLGSGNHFVEVCTDTTGAVWLMLH
SGSRNIGKELAEHHIGVAQKLPHNQDLVDRDLAVFVADTPQMAAYRNDLFWAQEYAKYNR
TLMMALLKDVVRKEFKKAKPLFEPEISCHHNYVAEERYDGMDLLVTRKGAIRAGSGDLGI
IPGSMGTGSYIVKGLGNDSSFNSASHGAGRRMSRNAAKRRYTAKDLEEQTRGVECRKDSG
VVDEIPGAYKSIDQVIDQQRDLVEVVAKLKQVVCVKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacgtggagatgccgggcgcccggacgccgatccggatgtgggcggacccggcg
acggtcgaggagggcgccctgcgccagctccagaacgtcgcgacgctgccgtggatcaag
ggcctcgccgtgatgccggacgtgcactacggcaagggcgccaccgtcggctcggtgatc
gcgatgcgcggcgcggtgtgcccggccgcggtcggggtggacatcggctgcgggatgtcc
gcggtgaagacctcgctgaccgcgaacgatctgccgggcgacctgtcccggctgcgctcg
aagatcgagcaggcgatcccggtgggccgcggcatgcatgacgacccgatcgagccgggc
ggcttccacggcctggcgaccagcggctgggacgaattctgggggcggttcgacggggtt
gccgaggcggtccacttccgccaggggcgggccaccaagcagatgggcacgctcggcagc
ggcaaccacttcgtggaggtctgcaccgacaccaccggcgccgtctggctgatgctgcac
tccggctcccgcaacatcggcaaggaactggccgagcaccacatcggcgtggcccagaag
ctcccgcacaaccaggacctggtcgaccgcgacctcgccgtcttcgtcgcggacaccccg
cagatggcggcgtaccgcaatgacctgttctgggcgcaggagtacgccaagtacaaccgc
accctgatgatggcgctcctgaaggacgtcgtccgcaaggagttcaagaaggccaagccg
ctgttcgagccggagatctcctgccatcacaactacgtggcggaggagcggtacgacggg
atggacctgctggtcacccgcaagggcgcgatccgggccggctccggcgacctcggcatc
atcccgggctccatgggcacgggctcgtacatcgtcaagggcctgggcaacgacagctcg
ttcaactccgcctcgcacggcgcgggccggcgcatgagccgcaacgcggccaagcggcgc
tacaccgccaaggacctggaggagcagacgcggggcgtggagtgccgtaaggactccggt
gtcgtggacgagatcccgggcgcctacaagtccatcgaccaggtcatcgaccagcagcgg
gacctggtggaggtcgtcgcgaagctgaagcaggtcgtctgcgtgaagggctga
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