Streptomyces griseofuscus: HEP81_05186
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Entry
HEP81_05186 CDS
T07010
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sgf
Streptomyces griseofuscus
Pathway
sgf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sgf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HEP81_05186 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgf03019
]
HEP81_05186 (rne)
03009 Ribosome biogenesis [BR:
sgf03009
]
HEP81_05186 (rne)
Enzymes [BR:
sgf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
HEP81_05186 (rne)
Messenger RNA biogenesis [BR:
sgf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HEP81_05186 (rne)
Ribosome biogenesis [BR:
sgf03009
]
Prokaryotic type
rRNA processing factors
HEP81_05186 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
QNT95445
UniProt:
A0A7H1Q565
LinkDB
All DBs
Position
5678716..5683311
Genome browser
AA seq
1531 aa
AA seq
DB search
MLEPTEPIEGSELNTPSDTLPPRRRRRAASRPAGPPVAAEAPTEVTVPAIPAAEDTEEPV
ETAGAQAPQAAEEAAPAARPRRRAARRASAPAGAPAAEAVEPAETVAPAAAEVTEGGEVV
VGEEAAPRRTRRRATRSVATPAAEAAAAETPAATTTEPAPEDEAPAARPRRRAARRAAAP
AAEVTETVAPTAEAAETTAAEAEPVEEAPAARPRRRATRRASAPAGAPAATEVAEAVEQA
DTVVPPTAAPAEPVQAEAPAAPARRRAARRASAPAGSPEAAEATETVVRATVEDASEVAP
AEEEPAAEAAPARTRRRATRRASAPAGSPEAAEATETVVRATVEDASEVAPAEEEPAAEA
APARTRRRATRRASAPTGAPKAAEETPAEPVAESVAEPAVEAQAPAVEAESAVSAESEDD
AAPRRARRRATRRVTAPESAPAEAAHTPEVPVTTHTTEPAPAAEAVPAAAEASGAAETPA
PRRARRRSVRPASGFSEPARGAGAEEGSRRPARPAVAVFQAPVFAEPRFQTPERAAAEAA
AGATEPAEPAEPVEAEQPAEPQQRAEYTEERAEAGSRRRRRRRAERVEEAPVAEAAAEEE
DEEPEGAEGEAEDAEGYEESSSRRRRRRGGRRRRRGDAAEGEGGEESEELAAEQAAQDAE
DTAEQEEEDDEEAHGEESGGSSAGSRRRRRRRRRAGESAADGEPSSDDPERTVVKVREPR
KQSEPSDEVQSIKGSTRLEAKKQRRREGREQGRRRVPIITEAEFLARREAVDRVMVVRQH
GERTQIGVLEDNVLVEHYVNKEQSTSYVGNVYLGKVQNVLPSMEAAFIDIGKGRNAVLYA
GEVNFGALGMGNGPRRIESALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEG
SMTGISRKLPDTERARLKTILKKIVPEDAGVIVRTAAEGASEDELRRDVERLQAQWEDIQ
KKAKSGNAPTLLYGEPDMTVRVVRDIFNEDFSKVIVSGDEAWQTIHGYVAHVAPDLAGRL
SKWTSEVDVFATYRIDEQLAKALDRKVWLPSGGSLVIDRTEAMVVVDVNTGKFTGQGGNL
EETVTRNNLEAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQ
VAEVTSLGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHMEQPGSAGGGGKRKKRGRGG
DAQEQPHEHEHVHETAAVAVDSGEAVEPEIETAAEVAAEIAEPVALTAPEFSPDEELYSS
VAEAEAAAGRGRSRRRASRRASAPAGAPKAEKSARKAARTQDADTEQDVAQHAGAEAAVP
TAQDVTAEQAAARPVRPEPAAEALAEPAAAEDQVVPAPEAAEEAPKGRTRRRATRKVSAP
AGSPAGAEATVVTVAETAPAAPVAEPAAEEAPAPAESAAPARPRRRAVRQTAAPTASEET
AVVVVPAAAEEAPAAEAPAEEAPAEEAPAKKTARKAAKKATAKKAATKKTAAKKTAAKKT
AAKKTTAKKAAATKKTAAKKTAATPQSASVD
NT seq
4596 nt
NT seq
+upstream
nt +downstream
nt
atgcttgagccgaccgaacccatcgagggttccgaactgaacacaccgagcgacaccctg
ccgccgcgcaggcgtcgccgtgccgcctcccgccccgcgggtccgcccgtcgcggcggag
gcacccaccgaggtcaccgtcccggccataccggccgcggaggacaccgaggagccggtg
gagaccgccggggcccaggccccgcaggcggccgaggaggccgcaccggccgcgcgcccg
cgccgccgtgccgcacgtcgcgcctccgcgcccgccggggcgcccgccgccgaggccgtc
gagcccgcggagaccgtcgcaccggccgccgcggaggtcaccgagggcggcgaggtcgtc
gtcggcgaggaggccgcaccgcggcgcacccgccgccgcgccacccgcagcgtcgcgacg
ccggccgcggaggcggccgccgccgagaccccggccgcgaccaccactgagcccgcgccc
gaggacgaggcgcccgccgcgcgtccgcgccgccgcgccgcccgtcgtgccgccgcgccc
gccgccgaggtcaccgagaccgtcgcacccaccgccgaggccgccgagaccacggccgcc
gaggccgagccggtcgaggaggcgcccgccgcgcgcccccgccgtcgtgccacgcgtcgt
gcgtcggcgcccgccggtgcgcccgccgccaccgaggtggcggaggccgtcgagcaggcg
gacaccgtcgtgccgccgaccgccgccccggccgagccggtccaggcggaggcgcccgcc
gcccccgcccgtcgccgtgccgcccgccgcgcctccgcgcccgccggctcgcccgaggct
gccgaggccaccgagaccgtcgtccgggccaccgtcgaggacgcttccgaggtcgccccg
gccgaggaggagcccgcggccgaggccgcccccgcccgtacccgccgccgtgccacccgc
cgcgcctccgcgcccgccggctcgcccgaggctgccgaggccaccgagaccgtcgtccgg
gccaccgtcgaggacgcttccgaggtcgccccggccgaggaggagcccgcggccgaggcc
gcccccgcccgtacccgccgccgtgccacccgccgcgcctccgcgcccaccggtgcgccg
aaggccgccgaggagacccccgcggagccggttgccgagtcggtcgccgagcccgccgtc
gaggcgcaggcccccgccgtcgaggccgagagcgccgtgagcgccgagagcgaggacgac
gccgccccgcgccgtgcccgccgtcgcgccacccgccgggtcaccgcgcccgagagcgcc
cccgccgaggccgcgcacaccccggaggttcccgtcaccacgcacaccaccgagcccgcg
ccggccgccgaggccgtcccggccgccgccgaggcgtccggggccgccgagacccccgcg
ccgcgccgcgcccggcgccggtccgtgcgccccgcgtccgggttctccgagcccgcgcgc
ggcgccggggccgaggagggctcgcgccgtccggcccgtcccgccgtcgccgtcttccag
gcgccggtgttcgccgagccgcgcttccagacccccgagcgggccgccgccgaggccgcc
gcgggagccactgagcccgccgagcccgccgagcccgtcgaggccgagcagcccgcggag
ccgcagcagcgcgcggagtacaccgaggagcgtgccgaggccggttcgcgccgtcgccgt
cgccgccgcgccgagcgcgtggaggaggccccggtcgccgaggccgccgccgaggaggag
gacgaggagccggagggcgccgagggcgaggccgaggacgccgagggctacgaggagtcc
tcctcgcgccgccgtcgccgccggggtggccgtcgccgccgtcgcggggacgccgccgag
ggcgagggcggcgaggagtccgaggagctggccgccgagcaggccgcgcaggacgccgag
gacaccgccgagcaggaggaagaggacgacgaggaggcgcacggcgaggagtcgggcggc
tccagcgccggcagccgtcgccgtcgtcgccgccgccgtcgtgccggtgagtccgccgcg
gacggcgagccgtcctccgacgacccggagcgtacggtcgtcaaggtccgcgagccgcgc
aagcagagcgagccgtccgacgaggtgcagtccatcaagggctcgacccgtctggaggcg
aagaagcagcgccgccgcgagggccgtgagcagggccgccgccgtgtcccgatcatcacc
gaggccgagttcctggcccgtcgtgaggccgtcgaccgggtgatggtcgtccgccagcac
ggcgagcgcacccagatcggcgtccttgaggacaacgtgctcgtggagcactacgtcaac
aaggagcagtcgacgtcgtacgtcggcaacgtctacctcggcaaggtgcagaacgtgctg
ccgtcgatggaggccgccttcatcgacatcggcaagggccgcaacgccgtgctgtacgcc
ggtgaggtcaacttcggcgcgctcggcatgggcaacggcccgcggcgcatcgagtccgcc
ctcaagtccgggcagtcggtcctggtgcaggtcaccaaggacccgatcgggcacaagggc
gcgcgtctgaccagccaggtctccctgccgggccgctacctcgtgtacgtccccgagggc
tccatgaccggcatcagccgcaagctgcccgacaccgagcgggcccggctgaagacgatc
ctcaagaagatcgtccccgaggacgcgggcgtcatcgtgcgcaccgccgccgagggcgcg
agcgaggacgagctgcgccgcgacgtcgagcggctccaggcgcagtgggaggacatccag
aagaaggccaagagcggcaacgcgccgacgctgctctacggcgagccggacatgaccgtc
cgggtcgtgcgcgacatcttcaacgaggacttctccaaggtcatcgtcagcggtgacgag
gcctggcagacgatccacgggtacgtcgcgcacgtcgcgcccgacctcgcgggccgcctg
tcgaagtggacctccgaggtcgacgtcttcgccacctaccggatcgacgagcagctcgcc
aaggcgctggaccgcaaggtctggctgcccagcggcggttcgctggtgatcgaccggacc
gaggcgatggtcgtcgtcgacgtcaacaccggcaagttcaccggccagggcggcaacctg
gaggagacggtcaccaggaacaacctggaggcggccgaggagatcgtgcgccagctgcgg
ctgcgcgacctcggcggcatcatcgtgatcgacttcatcgacatggtcctggagtccaac
cgggacctggtgctgcgccgtctgctggagtgcctgggccgcgaccgtacgaagcaccag
gtggccgaggtgacctcgctcggcctggtgcagatgacccgtaagcgggtcggccagggt
ctgctggagtccttctccgagacctgtgtgcactgcaacggccgcggtgtcatcgtgcac
atggagcagcccggttccgccggtggcggcggcaagcgcaagaagcgcggccgcggcggc
gacgcgcaggagcagccgcacgagcacgagcatgtgcacgagaccgccgcggtcgccgtg
gacagcggtgaggccgtcgagccggagatcgagacggccgccgaggtggccgccgagatc
gccgagccggtcgccctgacggccccggagttctcgccggacgaggagctgtacagcagc
gtcgccgaggcggaggcggcggccggtcgcggccgttcccgccgccgggcgagccgtcgc
gcgtcggccccggcgggcgcgccgaaggcggagaagtccgccaggaaggccgcccggacg
caggacgccgacaccgagcaggacgtcgcgcagcacgccggcgccgaagccgccgtgccg
accgcacaggacgtcaccgccgaacaggccgcggcccgcccggtgcggcccgagccggcc
gccgaggcgctggccgagcccgccgccgccgaggaccaggtggttccggcccccgaggcc
gccgaggaggcgcccaagggccgtacccgccgtcgggcgacccggaaggtgtccgcaccg
gccggttcccccgcgggtgccgaggccaccgtggtgaccgtcgccgagaccgcgcccgcg
gccccggtggcggagcccgccgccgaggaggcgccggcgcccgccgagagcgccgcgccg
gcccgtccgcgccgtcgcgcggtgcggcagacggccgcgccgaccgcgtccgaggagacg
gccgtggtggtcgtcccggcggccgcggaagaggcgcccgcggcggaggctcccgctgag
gaagcccccgccgaggaggctccggccaagaagaccgcccgcaaggcggccaagaaggcc
acggccaagaaggcggccaccaagaagacggcggcgaagaagaccgccgccaagaagacc
gccgcgaagaagacgacggccaagaaggcggccgccacgaagaagacggcggcgaagaag
accgcggcgaccccgcagtcggcctccgtcgactga
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