Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069: SGGBAA2069_c06010
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Entry
SGGBAA2069_c06010 CDS
T01444
Symbol
deaD
Name
(GenBank) DEAD-box ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sgg
Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069
Pathway
sgg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sgg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SGGBAA2069_c06010 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgg03019
]
SGGBAA2069_c06010 (deaD)
03009 Ribosome biogenesis [BR:
sgg03009
]
SGGBAA2069_c06010 (deaD)
Enzymes [BR:
sgg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SGGBAA2069_c06010 (deaD)
Messenger RNA biogenesis [BR:
sgg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SGGBAA2069_c06010 (deaD)
Ribosome biogenesis [BR:
sgg03009
]
Prokaryotic type
rRNA helicases
SGGBAA2069_c06010 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
CBZ47773
LinkDB
All DBs
Position
635424..637004
Genome browser
AA seq
526 aa
AA seq
DB search
MKFTELNLSENILAAVEKAGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL
DKIDTNRNLVQALVIAPTRELAVQGQEELFRFGREKGVKVRSVYGGSSIEKQIKALRSGA
HIVVGTPGRLLDLIKRKALKLDHVETLILDEADEMLNMGFLEDIEAIISRVPETRQTLLF
SATMPEAIKRIGVKFMQNPEHVKVAAKELTTDLVDQYYIRVKEQDKFDTMTRLMDVDQPE
LSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNIDILVATDVAA
RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKHGQSITFVAPNEMGYLSIIEKLTKK
RMKGLKPATADEAFKAKKKVALKKIERDFADEAIRANFDKFKGDAVKLAAEFTPEELALY
ILNLTVKDPDTLPKVEIAREKPLPFKPSGGGFNNRKAGRGNGRGRDNRRGGRSDRKRDDR
DNNGYRDFKRTSSKNKRDFQNKDNKRPRRTSSEKKTGFVIRNKGER
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatttacagaacttaacttatcggaaaatatccttgctgccgtagaaaaagcaggc
tttgttgagccatctccaatccaagaattaacgattcctttggctttggaaggtaaggat
gttatcggacaagcacaaactggaacagggaaaacagcagcctttggcttgccaactttg
gacaaaattgatacaaatcgtaatcttgttcaagccttggttatcgcaccaacacgtgaa
ttggctgttcaaggacaagaagaattgttccgttttggtcgtgaaaaaggtgtgaaagtc
cgttccgtttacggtgggtcaagcattgagaaacaaattaaggcacttcgttcaggagct
cacattgtagtgggaacaccagggcgtttgcttgatttgattaaacgcaaagctttgaaa
cttgaccatgttgaaacattaatccttgatgaagcagatgaaatgcttaacatgggattc
ttagaagatattgaagcgattatcagtcgtgttcctgaaacacgtcaaacccttcttttc
tcagcaactatgccagaagctattaaacgtattggggtgaaatttatgcaaaaccctgaa
cacgttaaagttgctgctaaagaattgactactgatcttgttgaccaatactatattcgc
gttaaagaacaagataaatttgatacaatgacacgtcttatggacgttgatcaacctgaa
ttgtcaattgtctttgggcgtacaaaacgtcgtgtggatgaattgacacgtggattgaaa
ttacgtggctatcgtgccgaaggtattcacggtgaccttgaccaaggtaaacgtctccgt
gttcttcgtgatttcaagaatgacaatattgacatcttggttgcgactgacgttgcagcg
cgtggtcttgatatttcaggggtcacacacgtttataactacgatattccgcaagaccca
gaaagctatgttcaccgtattggacgtactggacgtgctgggaaacatggtcaatcaatc
actttcgtagcaccaaacgaaatgggatatttgtcaatcattgaaaaattgacgaaaaaa
cgcatgaaagggttgaaaccagcgactgctgatgaagcttttaaagcgaagaaaaaagtt
gcgcttaagaaaattgaacgtgattttgcggatgaagcgattcgtgcaaactttgacaaa
ttcaaaggtgatgctgttaaattggcagcagaatttacgccagaagaattggcattgtac
atcttgaacttgaccgtaaaagacccagatacacttccaaaagtggaaattgcgcgtgaa
aaaccattaccatttaaaccatcaggtggtggctttaataaccgcaaagctggtcgtggc
aatggtcgcggtcgtgataatcgccgtggtgggcgttcagacagaaaacgtgatgaccga
gacaataacggctatcgtgatttcaaacgcacatcatctaagaacaaacgtgatttccaa
aacaaagataacaaacgcccacgtcgcacatcaagcgaaaagaaaacaggatttgttatc
cgtaacaaaggtgaaagataa
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