Sinocyclocheilus grahami (golden-line barbel): 107548175
Help
Entry
107548175 CDS
T04918
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
sgh
Sinocyclocheilus grahami (golden-line barbel)
Pathway
sgh03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sgh00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107548175
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sgh03021
]
107548175
03019 Messenger RNA biogenesis [BR:
sgh03019
]
107548175
Transcription machinery [BR:
sgh03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
107548175
Messenger RNA biogenesis [BR:
sgh03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
107548175
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
DUF6980
Motif
Other DBs
NCBI-GeneID:
107548175
NCBI-ProteinID:
XP_016084240
UniProt:
A0A672S898
LinkDB
All DBs
Position
Unknown
AA seq
1461 aa
AA seq
DB search
MSDEGAREDACREYQSSLEDLTFNSKPHINMLTILAEENIQFTKDIVAIIEAQIAKAPPG
EKLPVLYLVDSIVKNVGGEYLEVFAKNLVNSFICVFEKVDEATRKSLFKLRSTWDEIFPL
KKLYAVDVRVNSIDPAWPIKPLPPNVNASIHVNPKFLKPTEETSPKPPAPQPPAQSLKQE
QLIRQQLLAKQKQLLELQQKKIELELEQTKAQLATSPAISSNHHVGAPARFNISPKVTHT
VPALQTKPWPPAPSEKMATRDPRLNRLGATVNAKEQVMHKKESPIIPGFPTTSEKRGQVS
AERPSKLEKLRIPKKDNSAVEEKPKSKSVSPSGKGILVRPRGMESEHSKTAEVNKKDPRL
HKQMHDRTDSKDDDVREKKRSSEKKDRDEGVKNLDHQKSSSTRGKLINGSLNKHERLETF
LKQEIKVNKANVRKRSRSISRSPPLHSPKRKERRSSPKRKTRSITPPPKSGKARISKHSH
NDDAFPQSSLRDERAKKSAPEPRRSKRPLDDRAADQKDGPQLRISPAEHKDTKDSKRWRS
GWEENKHPKQSDSDLSHGRLVNQRHKTWNTNQRPSTPRIPKQHRLSVDSNIQIPEALNSA
SKRDLLRKASKSHADGEITSDEFLNVAHQINQLFQYQEERLRSDSWDESCDEGVYQSKKK
QEGAMSDAELSYLEHKSKLRRTQLQRPVQKEGQSPLDVMFYQLQREMAEQYSESSGVHKM
SGDAIKPDHEGPRRTNRPPPCTGSTFRNSPSPVNLDGTFGKSTGLPFERSSSPVEMDQQP
GDISPRFESPNSVHSGTGPDDGPINVEGLSMQDNFLELGRSGQNLDESPGNTPTHTSEGS
MAQVNPPRHDGPNISQRFDRYKSSQAPFDGPPSHMREPRLDGPPRPYVPPPRYEGSTGGF
DGSGGPVRFPGHRFDAPPRFERFPKAHERSVRFNNPPVSHRPVRYTEPHNMVRFDPQAPI
HYDHPMHQNRFVNPPRFDNPHMQHGPPGYEEPRFPARLMNYDEQQGAVRFDSPSGGMHFE
NPVQPEPLIFDAPPVMPRYDPQGPPRYCGPNIPNQLRPQEPTIYDQTQGQAPVINPAVPP
PNFNMAPMNTYGGPAQQFTMQQNVSQASNFSVTGPTSSDFQGSFRPAPFPGPGVGNVPQP
IMGAQPFMPPNQISFQPGSQFQQPEPESLRQIDVNDLLSKLISTGIIKPAQTDSTTDSTS
ASQTLSVPEEEEEEEQEEDESVPDMTGFVLEDMKLRHDSIITKLYTGIQCYSCGMRFTAS
QTDVYADHLDWHYRQNRSEKDISKKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVH
EEVVQKTQEAAKEREFQSVKAAADVVHELCEICQEQFEMYWEEEEEEWHLKNAIRVDEKT
YHPSCYEDYKNTSSFVDCTPSPNKMLTENPLTAFIKQEQGDEGSCSSIKEEPSEDNTDAP
TVKEEVQVKLEGESQTSAIIF
NT seq
4386 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacgaaggcgcgagggaggacgcatgccgcgagtatcagtcctcgctggaagat
ctgactttcaacagcaaaccgcacatcaacatgctcaccattctagccgaagaaaacatc
cagttcaccaaggatatcgtcgcaataattgaagcacaaattgccaaggcacctcctggt
gagaagcttccagttttgtacttagtggattccatagtgaagaatgttggaggggaatac
cttgaagtgtttgctaagaacctagtcaattcctttatttgtgtatttgagaaggtggat
gaggccactagaaaaagtctcttcaaattgcgttccacatgggatgaaattttccccttg
aagaaactatatgcagtagatgtgcgtgtgaactcaatagatcctgcctggcctataaaa
ccattgccaccaaatgtgaatgccagcatacatgtcaacccaaaatttttaaaaccgact
gaagaaacatctccgaagcctcctgcaccacaacctccagctcagagcctgaaacaagaa
caattgataaggcaacagttgcttgcaaagcaaaagcagttgttagaacttcaacaaaag
aagatagagcttgaacttgaacaaacgaaagctcagttggctaccagtcctgctatttct
tcaaaccaccatgtcggtgctcctgcacgtttcaatatctcaccaaaagtcactcacacg
gttcctgcactacagaccaaaccttggcctccagctccatcagaaaaaatggcaaccaga
gatcctagattaaacagacttggtgcaactgtaaatgcaaaggaacaagtgatgcataag
aaggagagtccgatcataccaggctttccgactacatcagaaaaaagaggacaagtctca
gctgaaagaccgagtaagttggagaagttgaggattccaaaaaaggataactctgcagtt
gaggaaaagcctaaatccaagtcggtgtcaccatctggaaaaggcatccttgtcagaccc
agaggaatggagtctgagcattcaaaaactgctgaagtgaataagaaggacccaaggcta
cataagcagatgcatgacaggaccgattcaaaagatgatgatgtccgagagaagaaaaga
agttcagagaagaaagatagggatgaaggtgttaaaaacttggatcatcagaagtccagc
agcaccaggggcaagcttataaatggctctctaaacaagcatgaaagacttgagacattt
ctgaaacaagaaattaaagtgaacaaagcaaatgttagaaaaaggtctcggtcaatatcc
cgttcaccaccattgcattctcccaaaagaaaagagaggcgttcatctccaaagagaaaa
accaggagtattactccaccccccaagtctggaaaggctaggataagtaaacattcacat
aatgatgatgcttttccacagtcgagtcttagagatgaacgtgccaagaaaagtgcccca
gaaccaagacgatcaaaaaggccacttgatgatagagctgctgatcagaaagatggacca
cagctgagaatttctcctgcagagcataaagacacaaaagatagcaagagatggaggagt
ggatgggaagagaataaacatcccaaacagtccgattcagatctctcacacggacgacta
gtcaaccagagacacaagacatggaacactaatcaaagaccgtccacacctcgtatacct
aaacagcatcgcttgagtgttgatagcaacatacaaataccagaagcacttaattctgca
agtaaacgggaccttttaagaaaggctagcaaaagtcatgctgatggtgaaataaccagt
gacgaattcctcaatgtagcccatcaaataaaccaactttttcagtatcaagaggaaaga
ctgcgttctgactcttgggatgaatcgtgtgatgagggagtatatcaatcaaaaaagaaa
caagaaggagccatgtctgatgcagagctttcttatcttgagcataaatctaagttgaga
agaacacagcttcagcgtccagtgcaaaaagagggccagtcacctttggatgtaatgttc
tatcagcttcaacgtgaaatggccgaacaatacagtgaaagctcaggagtgcataaaatg
tctggtgatgccataaagcctgaccacgaaggtcctagaagaaccaacaggcctcctcca
tgtacaggttccacattcagaaattcaccaagtccagtcaacttagacgggacctttgga
aaatccacaggactgccatttgaacggtcatcatctccagttgaaatggatcaacaacca
ggagacatcagcccacgttttgaaagtcccaacagtgtgcactctggtacaggtccagat
gatggtcctataaatgtagagggtctttcaatgcaagataatttcttggaactgggaaga
agtggacaaaaccttgatgaatctcctgggaatacaccaacgcacacctcagaaggatct
atggcacaggtgaacccgccacggcatgatggaccaaatatttctcaacgatttgataga
tataagagttctcaagctccctttgatgggccacctagccacatgagagagccacggtta
gatggtcctccaagaccttatgttcctcctcctcggtatgaaggcagtacagggggattt
gatgggtctggtggccccgtaaggtttcctggacatcgctttgatgcccctccccggttt
gaaagatttcccaaagcccatgaaagatctgtgagatttaacaacccaccagtatcacac
aggccagtgaggtacacagagcctcacaacatggtgagatttgaccctcaagccccaatt
cattatgaccacccaatgcaccaaaaccgatttgttaatccaccaaggttcgataatcct
cacatgcaacatggtcctccaggatacgaggaaccacggttcccagctagactaatgaat
tatgatgaacagcagggtgcagttagatttgatagtccatcaggtgggatgcactttgag
aacccggtgcagcctgaacccttaatatttgatgcaccgcctgtcatgccaagatatgac
ccacaaggtcctccaagatactgcggtccaaatattccaaaccagctgagaccacaggag
ccaacaatatatgatcaaactcaaggtcaagctcctgtgataaaccctgctgttccacct
cctaatttcaacatggcacccatgaacacgtatggtggcccagcccaacagtttaccatg
cagcaaaatgtttctcaagcatctaacttcagtgtgacaggccctacatcatcggatttc
caaggttcatttagacctgctccattccctggtccaggtgttgggaatgttcctcagcct
attatgggagctcaacccttcatgccaccaaaccaaatatctttccagcctggttcccag
tttcagcagcctgagcccgagtcattgaggcaaatagatgtgaacgatctgttgtcaaaa
cttatatccactggaataataaaacctgcacaaacagactcaacgactgactctacttca
gcaagtcagactttatctgtgcctgaagaggaagaggaggaggaacaagaggaagatgaa
agtgtcccagatatgactggctttgttttggaggacatgaaactgagacacgacagcatt
atcaccaaactctatacaggaatccagtgctattcctgtggcatgcgttttactgcatct
cagacagatgtgtatgcggatcatttggactggcactacaggcagaatcgttcagagaag
gacatcagtaagaaagttacacaccgtcggtggtactacagtctgacggattggattgaa
tttgaggaaatcgctgatcttgaggagagggcaaagagtcagttctttgaaaaagttcat
gaagaggttgtacagaaaactcaggaagcagccaaagagagagagttccagagcgtaaag
gctgcagcagatgtcgttcacgagctgtgtgagatttgccaggagcagtttgagatgtac
tgggaggaggaagaggaagagtggcatctgaagaatgccatcagagtcgatgaaaagaca
tatcatccctcatgttacgaagactacaaaaatacatcctcctttgtggactgcacaccc
tcacccaataaaatgcttacagaaaaccctttaacagctttcataaaacaagagcagggt
gatgaggggtcatgctccagtattaaagaagagccctctgaggacaatacagatgcacca
acggtaaaagaggaggttcaggttaagttagaaggagaatcacaaaccagtgcaattatt
ttttaa
DBGET
integrated database retrieval system
