KEGG   Sinocyclocheilus grahami (golden-line barbel): 107548288
Entry
107548288         CDS       T04918                                 
Symbol
ercc8
Name
(RefSeq) DNA excision repair protein ERCC-8 isoform X1
  KO
K10570  DNA excision repair protein ERCC-8
Organism
sgh  Sinocyclocheilus grahami (golden-line barbel)
Pathway
sgh03420  Nucleotide excision repair
sgh04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:sgh00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    107548288 (ercc8)
  09124 Replication and repair
   03420 Nucleotide excision repair
    107548288 (ercc8)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:sgh04121]
    107548288 (ercc8)
   03400 DNA repair and recombination proteins [BR:sgh03400]
    107548288 (ercc8)
Ubiquitin system [BR:sgh04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     107548288 (ercc8)
DNA repair and recombination proteins [BR:sgh03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      107548288 (ercc8)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_EML_2 EIF3I Beta-prop_RIG_2nd Beta-prop_CAF1B_HIR1 Beta-prop_WDR75_1st Beta-prop_EIPR1 WDR55 Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 Beta-prop_TEP1_C Beta-prop_EML NBCH_WD40 WD_LRWD1 WDR90_beta-prop_4th Beta-prop_IFT122_1st Beta-prop_RIG_1st Beta-prop_WDR75_2nd WD40_MABP1-WDR62_1st Beta-prop_WDR19_1st Beta-prop_SCAP Beta-prop_IFT140_1st Beta-prop_HPS5 Beta-prop_Vps41 Beta-prop_RSE1_2nd Beta-prop_IFT140_2nd Nucleoporin_N Cytochrom_D1
Other DBs
NCBI-GeneID: 107548288
NCBI-ProteinID: XP_016084410
LinkDB
Position
Unknown
AA seq 408 aa
MLSFLYARQSGLDDPVRLRRAESTRRVLSLELNHNRDVDRIHGNGINTLDTEVIDGRYML
SGGSDGVIVIYDLENNSKKPQYTCKAICTVGRSSRHVHKFSVETVQWYPHDTGMFVSSSF
DKTMKVWDTETLKPAEEFQFDGNVYCHHMSPVARKQSLVAALLCSVLAVGTKDPKVQLCD
LKSGSRIHILQGHRGEILSVRWSPRYDHILATASTDSRVRIWDVRRASGSLFTLDQHNGD
KSKASSEAVNTAHNGRVNGLCFTADGLHLLSTGTDDRMRLWNSGTGENTLVNYGKVVNES
RKGLKFTVSRGCSPEFVFVPCGSSVAVYGLHSGELITMLRGHYNNVDCCEFHPDYQELYS
GGKDCNILAWVPVLRQPGIEDDETNSKRGGTQAAINPAFEDAWSSDED
NT seq 1227 nt   +upstreamnt  +downstreamnt
atgttgagttttctttatgccaggcaatcagggcttgacgacccagttcgtctgagacgt
gcagagtccacaagaagggtgctgagtctggagttgaaccacaacagagatgttgatcgt
attcatggcaatggaattaacaccctggacactgaggttattgatggaagatatatgttg
tcaggtggatctgatggcgtaattgtgatctatgacttggaaaacaacagcaagaagcct
caatatacttgcaaagcaatctgcacagtgggcaggtccagtcggcatgtgcataaattc
agcgttgaaacagtgcaatggtacccgcatgacaccggtatgtttgtatccagttcgttc
gacaaaaccatgaaagtctgggacacagaaactcttaagccagctgaggagttccagttt
gatggcaatgtctactgtcatcacatgtctcctgtagccaggaagcagagtcttgtagca
gctctattgtgctctgtgttggcagttggtaccaaagaccccaaagtgcagctttgtgat
ctgaagtctgggtcgcgcatccacatccttcagggtcacaggggcgagatcctctcagtc
agatggtctccacgatacgatcacatcctggccactgccagcactgacagtagggtccgt
atctgggatgtgagaagagcctctgggagtctttttactttggaccagcacaatggggac
aaatccaaggcctcatctgaagcagtgaacacagcacataatgggcgagtgaatggattg
tgcttcacagctgatggacttcatctcctctctactgggacagatgatcgcatgcgcctg
tggaacagtggcacaggggaaaacacattagtgaactatgggaaggttgtgaacgagagt
cgcaaaggcctcaagtttactgtatcgaggggctgcagtccagagtttgtgtttgtgcca
tgtggcagttcggtagcggtgtacgggcttcactcgggagagctgatcactatgttgagg
ggacattataataacgtagactgctgtgagttccacccagactatcaggagctgtacagt
ggaggtaaagattgtaacatcctggcctgggtcccagtgctgagacagcctggcattgag
gatgatgaaaccaactctaaacggggtggaacacaagctgctatcaatcctgcttttgaa
gatgcctggagcagtgatgaagactga

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