Sinocyclocheilus grahami (golden-line barbel): 107548322
Help
Entry
107548322 CDS
T04918
Name
(RefSeq) ATP-dependent RNA helicase DDX42-like
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
sgh
Sinocyclocheilus grahami (golden-line barbel)
Pathway
sgh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sgh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107548322
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sgh03041
]
107548322
Enzymes [BR:
sgh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107548322
Spliceosome [BR:
sgh03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
107548322
Complex B
107548322
Complex C
U2 SnRNP specific factors
107548322
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
107548322
NCBI-ProteinID:
XP_016084445
LinkDB
All DBs
Position
Unknown
AA seq
901 aa
AA seq
DB search
MNWNKGGPSGKRGFGFGGFSLASGNKEEPRLPQKAHSAFGASGPSGGYGKNQQLSSFYKI
GTKRANFDEENAYFEDDEEESSSTDLPYIPAENSPTRKQFQSGGGGGGGGGSDSEDDPLD
AFMAEVEDQAAKDMKKLEEKEKEKKLTKGIRDDIEEEDDQEAYFRYMAENPTAGLTQEED
EEEVDYDSDGNPIAPTIKKIIMPLPPIDHSEVDYPPFEKNFYIEHEELSSLTEAGVVELR
MKLNLKVSGAVPPKPATSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVAIALSGRDMIGI
AKTGSGKTAAFIWPMLVHIMDQKELEQGEGPIAVIVCPTRELCQQIHSECKRFGKVYGLR
SVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATSLQRVTYLVFDEADRMFDMG
FEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILVDPIRVVQGDIGEANEDVTQIVE
VLQSGQEKWGWLTRRLVEFTSAGSVLVFVTKKTNCEELATNLNQEGYSLGLLHGDMDQSE
RNKVIADFKKKNLPVLVATDVAARGLDIPSIRTVVNYDVARDIDTHTHRIGRTGRAGEKG
VAHTLLTTKDTSFAGDLVRNLEGANQSVSKDLMDLAMQNPWFRKSRFKGGKGKKLNIGGG
GLGYRERPGLGSESTERSSSGGAALGNYEAYKPSTGAMGDRMSALKQAFQSQYKNHFVAA
SGVPPKLTTKSSSSSGWTSAGSLSSLPSGAPEGPDRTHLSYSPSSSSSFSSMLPPPALSS
GTKMSGFSSAGSLSSVSDSYSSSSSKEGSRSDRNAEDRGRHRDRESHYRHGDRHSGGDRD
RYGERDRHSDRERHSDNRNGEGSHRDREGRSERDGGERSGTHKDSFAVPDPPKRKKSRWD
N
NT seq
2706 nt
NT seq
+upstream
nt +downstream
nt
atgaactggaacaagggaggcccgagtggcaagcgaggctttggattcgggggattctct
cttgccagtgggaataaagaggaacctcgtcttccccagaaggcccattctgcatttgga
gcttcaggaccatcaggtggatatggcaagaatcagcagctttcgtctttttacaaaata
ggaacaaaacgagccaatttcgacgaggagaatgcttattttgaggatgatgaagaggag
tctagcagtacagatctgccatatattcctgccgagaactcccccacaagaaagcagttc
cagtctggaggaggaggaggaggaggtggaggttccgacagtgaggatgaccctcttgat
gcttttatggctgaggtggaggaccaagcagcaaaggacatgaagaaacttgaggaaaag
gaaaaagagaaaaagttgaccaagggtatacgggatgacatcgaagaggaggatgaccaa
gaagcatattttcgttacatggcggaaaacccaacagctgggctgacccaagaggaagat
gaggaagaagtggactatgacagcgatgggaaccccattgctcctactattaaaaagatc
atcatgccactgccccccatagaccactcagaggttgactatcctccctttgagaagaac
ttctatattgagcatgaggaactcagcagtctgactgaggctggagtggtggaactgaga
atgaaactcaacctgaaggtttcaggtgcagtgcctcctaaaccagccaccagttttgct
cactttggatttgacgagcagctcatgcaccagatccgtaaatccgagtacactcaaccc
acacccatccagtgtcagggtgttgcgatagctttgagtggcagagacatgattggtatt
gccaaaactggcagtggaaagactgcagctttcatttggccaatgctggtgcacatcatg
gaccagaaggagctggagcagggagagggacccattgctgtgatcgtctgccccaccaga
gagctctgtcaacagatccattctgaatgcaagcgtttcggaaaggtatatggcctccgc
tcagtggcagtatatggaggcggcagcatgtgggaacaagccaaagcattacaggaagga
gccgaaattgttgtctgcaccccaggtcgcctgatcgatcatgtgaagaagaaggctaca
tcactgcagcgagtgacctacctggtatttgatgaagctgatcgcatgttcgatatgggc
tttgaataccaagtgagatccattgcaagccatgtcagacctgatcgacagactctgtta
ttcagtgcaacatttcggaagaaaattgaaaagctggcacgagatattttggtcgacccc
attcgtgttgttcagggagacataggagaggctaatgaagatgtcactcagatagtggag
gtgctgcagtctgggcaggaaaagtggggttggctgacacgtagactggttgagttcacc
tcagctggctctgtgctggtctttgtcactaaaaagactaactgcgaggagctggcaaca
aatctcaatcaggagggttatagcctagggctgctgcatggagacatggatcagagcgag
aggaacaaagtcattgctgactttaagaagaagaatctgcccgtattagtagctactgat
gttgctgctcgtgggttggatattccatctatccgtacagttgtgaactacgatgtagca
cgagacattgacacacatacacatcgaattggtagaacaggtcgtgcaggagagaagggt
gtagctcacactctgctcaccactaaagacacttcatttgctggtgacctggttcgaaat
ttagagggagccaatcagagtgtttcaaaggatctgatggacctggcaatgcagaatccc
tggttcaggaaatcccgctttaagggagggaaagggaagaagctaaatattggaggtgga
ggcctgggttacagagagagaccaggccttggatctgaatccactgagcgcagtagtagt
ggtggtgctgctcttggtaactatgaagcatacaaaccctccactggagccatgggagac
cgtatgtctgccctgaagcaagcatttcagtctcagtataaaaaccactttgtggcagca
tctggtgttcctcccaaactcaccacaaagtccagcagctcctccgggtggaccagtgca
ggaagtctaagttctttgccttcaggagcacctgaggggcctgacagaacccacctgtcc
tactcgccatcgtcctcttcctccttttcctccatgctgccgccccctgccctcagctca
ggcaccaaaatgagtggcttcagcagtgcaggctccctgagctcagtttcagactcttac
tctagctcttcttcaaaagaggggtcccgtagcgataggaatgctgaagacaggggtcgt
catcgagatcgagagagtcattatcgtcatggtgacaggcatagtgggggagaccgtgat
cgctatggggaaagggaccgccatagtgacagagaacgtcatagtgacaaccgaaacggt
gaagggagccatagggacagagagggacggtcagaaagagatgggggtgagaggtcaggg
actcataaagacagctttgcagttcctgatccccccaaacgtaagaaaagcagatgggac
aattaa
DBGET
integrated database retrieval system
