KEGG   Sinocyclocheilus grahami (golden-line barbel): 107548725
Entry
107548725         CDS       T04918                                 
Symbol
alyref
Name
(RefSeq) THO complex subunit 4
  KO
K12881  THO complex subunit 4
Organism
sgh  Sinocyclocheilus grahami (golden-line barbel)
Pathway
sgh03013  Nucleocytoplasmic transport
sgh03015  mRNA surveillance pathway
sgh03040  Spliceosome
sgh05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:sgh00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    107548725 (alyref)
  09122 Translation
   03013 Nucleocytoplasmic transport
    107548725 (alyref)
   03015 mRNA surveillance pathway
    107548725 (alyref)
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    107548725 (alyref)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sgh03019]
    107548725 (alyref)
   03041 Spliceosome [BR:sgh03041]
    107548725 (alyref)
Messenger RNA biogenesis [BR:sgh03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     107548725 (alyref)
    TREX complex
     107548725 (alyref)
Spliceosome [BR:sgh03041]
 Complex C
  Other components
   EJC/TREX
    107548725 (alyref)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    107548725 (alyref)
SSDB
Motif
Pfam: RRM_1 FoP_duplication RRM_occluded
Other DBs
NCBI-GeneID: 107548725
NCBI-ProteinID: XP_016085012
UniProt: A0A672SB06
LinkDB
Position
Unknown
AA seq 277 aa
MADKMDMSLDDIIKQSRQRGGGGRGSGRGGRGGRGGAGGGRGTGASGRLGNTGGGFGGRG
GGSGPMRNRQNLSRGRSRPTPYSRPKQLPDKWQHDLFDNGYSVNAGGGGGGGGGGAGVET
GGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMK
QYNGVPLDGRSMNIQLVTSQIDAQRRTPMQGLNRGGGGLNRNRIGGFGAPKGRGGRGGGG
ARGRGRGGRGGGSSKQQLSAEELDAQLDAYNARMDTS
NT seq 834 nt   +upstreamnt  +downstreamnt
atggcagacaagatggatatgtccttagacgacatcatcaagcaaagccggcagcgcggg
ggcggcgggcgcggcagcgggagaggaggccgcggtggccgcggaggcgcaggcggaggc
cgcggtactggcgccagcgggcgcctcggaaacacaggaggaggctttggaggccgcggc
ggcggatcgggccccatgaggaaccgccagaacctgagccgcggaagaagcagaccgacg
ccgtacagcaggcccaagcagctcccagacaagtggcagcatgacctgttcgacaacggc
tacagtgtgaacgctggcggcggtggaggcggcggcggtggtggagcaggcgtggaaacc
ggcggaaagctcctcgtgtccaatctcgactttggcgtctccgatgcagacattcaggaa
ctcttcgccgaatttggcactttgaagaaagcagcagtacattacgatcggtcaggacgc
agcctcggcactgcggatgttcactttgagaggaaagcagacgccctgaaagccatgaag
cagtacaacggtgttccccttgatggtcgctcaatgaacattcagcttgttacctcacag
atcgatgcacagaggcggactccgatgcagggtctaaatcgtggaggtggtggcctgaac
cgaaaccgaattgggggctttggtgcaccgaaaggtcgcgggggccgcggcggcggagga
gccagaggtcgggggcgaggtggtcgcggtggcggcagcagcaaacagcagctctctgct
gaagagctggacgcccagctagatgcctataacgccaggatggataccagctaa

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