Sinocyclocheilus grahami (golden-line barbel): 107548927
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Entry
107548927 CDS
T04918
Name
(RefSeq) LOW QUALITY PROTEIN: ATP-dependent RNA helicase DHX36-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
sgh
Sinocyclocheilus grahami (golden-line barbel)
Pathway
sgh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sgh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107548927
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgh03019
]
107548927
03012 Translation factors [BR:
sgh03012
]
107548927
Enzymes [BR:
sgh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107548927
Messenger RNA biogenesis [BR:
sgh03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
107548927
Translation factors [BR:
sgh03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
107548927
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
nSTAND3
AAA_22
NPHP3_N
AAA_19
NB-ARC
Rad17
AAA_14
TsaE
ABC_tran
Motif
Other DBs
NCBI-GeneID:
107548927
NCBI-ProteinID:
XP_016085286
LinkDB
All DBs
Position
Unknown
AA seq
541 aa
AA seq
DB search
MDSTLGLNSREEQGHGGGGGGERGKHPPHLKGREIGLWYAKWGGIKRSEAERKSRAVVQM
DEQEQHITWLLNSVQIQRDTGRDAHPSTSQSWRVKEEPSGHSYFDGDDPPEPQNIVKVPK
IEPKEEKRENEDESGASVKEELNETDLEYLFQDVGRIPSLDEEVKKDQKKKNDNARYLDM
LKFREKLPSYGMREELVRLISANQVLVISGETGCGKTTQVTQLILDDFIERGMGSLCRVV
CTQPRRISAISVAERAESVGEGKSCGYQIRLQSRLPRKQGSVLYCTTGIILQWLRSDPYL
SSISHLVLDEIYESLQSDVLLTIVKDPFTAREDLKVVLMSAMLNTEKFSKYFNNCSMIHI
PGYTYPVKEYLLEDVVELLKLELQHQDRIPHYRRGFMHVQNVRPEKEQKEAEYCESWPCF
ARTLRDRQYSDSTTDALEMMDDDDKIXELIIALIRHIVMKEDLSAILVFLPGWDNISTLN
DILMADQMFKSDRYRFIIIPLHSLMPTVSQTQVSLLSPLRCFKKPPPGVRKIMIATNIAE
T
NT seq
1625 nt
NT seq
+upstream
nt +downstream
nt
atggactcaactctgggactcaactcaagagaagagcagggacatggaggaggaggagga
ggtgaaagaggcaaacatccaccccatttgaagggtcgagaaataggactgtggtatgcc
aaatggggtggaatcaaaagatccgaggcagagaggaaatctagggctgttgttcagatg
gatgaacaagagcagcacattacttggctgctaaactctgtccagatccagagagacaca
ggcagagatgctcacccctctacatctcagagctggagggtgaaggaggagcccagtggc
cacagttactttgatggagatgatcctccagaacctcagaacattgtaaaagtgccaaaa
attgagcctaaagaggagaaacgggagaatgaggatgagtcaggagcaagtgtaaaagag
gaacttaatgagactgacctggagtacttattccaagatgttgggcggataccctccctg
gatgaggaggtcaagaaagatcagaagaagaaaaacgataatgctagataccttgatatg
ctgaaattcagagagaagctgccttcctatgggatgagagaggagctggttaggctaatc
agtgctaaccaggtactggtaatcagtggagagactggctgtgggaagaccacccaggtt
actcaattaatccttgatgacttcattgagaggggcatgggctctctctgcagggtggtt
tgcacacagccaaggcgtatcagtgccatatctgttgcagaacgggcagagtctgtggga
gaggggaagtcctgcgggtatcagatccgtctgcagagtcggttaccacggaaacaaggc
tcagtgttgtattgtactacaggcattattcttcagtggctgcgctcagatccatatctt
tcaagcataagtcatctggtcctggatgaaatttatgagagtcttcagtctgatgttctt
ctcaccatcgtgaaggacccgtttactgctcgagaggacctaaaagtagtcctcatgagt
gccatgcttaacactgagaaattcagcaaatatttcaataattgttccatgatccatatt
cctggatacacatacccagtgaaagagtacttactggaggatgtggtggaattgcttaag
ttagagctacaacatcaggaccgcatacctcactataggagaggatttatgcacgtccag
aatgtacggccagagaaagaacagaaggaggctgaatactgcgagagctggccctgcttc
gcccgcacactcagagaccgtcagtactcagacagcaccactgatgcgctggagatgatg
gatgatgatgacaagatcncggagcttatcatagcattgatcagacacatcgtgatgaaa
gaggatttgagtgcgattctagtgtttcttcctggatgggacaacatcagcaccctgaat
gatattctcatggctgaccagatgtttaagtcagatagatatcggtttatcatcatcccc
ctccactctttgatgcccacagtgtctcagactcaggtaagtcttctctctcccctccgg
tgtttcaaaaagccgcccccgggagtgcgcaagatcatgatcgctaccaacattgcagaa
accag
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