Sinocyclocheilus grahami (golden-line barbel): 107551645
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Entry
107551645 CDS
T04918
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
sgh
Sinocyclocheilus grahami (golden-line barbel)
Pathway
sgh03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sgh00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107551645
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sgh03021
]
107551645
03019 Messenger RNA biogenesis [BR:
sgh03019
]
107551645
Transcription machinery [BR:
sgh03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
107551645
Messenger RNA biogenesis [BR:
sgh03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
107551645
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
DUF6980
Motif
Other DBs
NCBI-GeneID:
107551645
NCBI-ProteinID:
XP_016088823
UniProt:
A0A672LUI7
LinkDB
All DBs
Position
Unknown
AA seq
1465 aa
AA seq
DB search
MSDEGAREDACREYQSSLEDLTFNSKPHINMLTILAEENIQFTKDIVAIIEAQIAKAPAG
EKLPVLYLVDSIVKNVGGEYLEVFAKNLVNSFICVFEKVDEVTRKSLFKLRSTWDEIFPL
KKLYALDVRVNSIDPAWPIKPLPPNVNASIHVNPKFLKPTEETSPKPPAPQPPAPSLTQE
QLIRQQLLAKQKQLLELQQKKIELELEQTKAQLAASPAIASNHHVGAPARFDISAKVTRT
VPAPQTKPWLPAPSEKMSTRDPRLNRPGATAVNAKEQVMHKKESQVTPNFPKTSEKRGPV
SAERQIKLEKLRIPKKDNSAIEEKPKSKSVSPSGKCILVRPRGMESEHSKTAELNKKDPR
LHKQMHDRTDSKDDDVREKKRSLEKKEKDEGVKNLDHQKSSSTRGKLINGSLNKHERLET
FLKQEIKVNKANVRKRSRSRSRSPPLHSPKRKERRSSPKRKTRSITPPPKSGKARISKHQ
HNDDAFPQSSLRDERSTKKSAPEPRRPKRPLDDKPAVQKDGLQQRIFPAEHKDTKDSKRW
RSGWEESKHPKQSESDLSHGRLGTQRRKTWNTNQRLSTPRTPKQHRLSLDSNIQIPEALN
SASKRDLLRKASKRHADGEISSDEFLNVAHQINQLFQYQEERQRSDSWDDSCDEGVYQSK
KKQQGMSDAELSYLEHKSKLKRTQLQRPVQNDGQSPLHEMFYQPQHEMTEQYSESSEVHK
MSGDAVKPEHEDPRRTDRPPSCTGSTFRNSPSPVNLDGTCGKSTEPPFERSSSPVEMDQQ
SGDISPRFESPNSVHSGTGPDDGPISVEVLPGHDHFLEQGRSGRNHGESPGNTPTHSSEG
SMAQVNTPRHDGASIPQRFDRYKSSQAPFDGPSSHMREPSLDGPPRPYAPPPPRYEGNTG
GFDGSGGPVKYPGHRFDAPHRFERFPIAHERPVRFNNPAVSHRPMRYTEPHSVVRFDPQT
PVRYDHPMHQNRFVNPPRFDNPHMQHGPPGYEEPRFPTRLMNYDEQQGTVRFDSPSGGMR
FENPVQPEPLRFDAPPVMPRYDPQGPPRYCGPNIPNQLRPQEPTMYDQTQGQAPVVNPVV
PPPTFNIPPMNTYGGPAQQFPMQQNVSQASNFSVAVPMSSDFQGSFRPAPFPGPGVGNVP
QPMMGPQPFMPPNQISFQPGSQFQQPEPEPLRQIDVNDLLSKLISTGIIKPAQTDSTTDS
TSAGQTLSVPEEEEEEEQEEDEDVPDLTGFVLEDMKQRHDSIITKLYTGIQCYSCGMRFT
ASQTDVYADHLDWHYRQNRSEKDISKKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEK
VHEEVVQKTQEAAKEREFQSVKAAADVVHELCEICQEQFEMYWEEEEEEWHLKNAIRVDG
KTYHPSCYEDYKNTSSFVDCTPSPNKMLTENPLTAFMKQEQGDEVSCSSIKEEPSEDVED
MDAPTVKEEVQVKLEGESQTSAIIF
NT seq
4398 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacgaaggcgcgagggaggacgcctgccgcgagtaccagtcctcgctggaagat
ctgactttcaacagcaaaccgcacatcaacatgctcaccattctagccgaagaaaacatc
cagttcaccaaggatatcgtcgcaataattgaagcacaaattgccaaggcacctgctggt
gagaagctcccagttttgtacttagtggattccatagtgaagaatgttggaggggaatac
cttgaagtgtttgctaagaacctagtcaattcctttatttgtgtatttgagaaggtggat
gaggtcactagaaaaagtctcttcaaattgcgttccacatgggatgaaattttccccttg
aagaaactatatgcactagatgtgcgtgtgaactcaatagatcctgcctggcctataaaa
ccattgccaccaaatgtgaatgcgagcatacatgtcaaccccaaatttttgaaaccgact
gaagaaacatctccgaagcctcctgcaccacaacctccagctccgagcttgacacaagaa
caattgataaggcaacagttgcttgcaaagcaaaagcagttgttagaacttcaacaaaag
aagatagagcttgaacttgaacaaacaaaagctcagttggctgccagtcctgctattgct
tcaaaccaccatgtcggtgctcctgcacgttttgatatctccgcaaaagtcactcgtacg
gttcctgcaccacaaaccaaaccttggcttccagcaccatcagaaaaaatgtcaaccaga
gatcctagattaaacagacctggtgcaacagctgtaaatgcaaaagaacaagtaatgcat
aagaaggagagtcaggtcacaccaaactttccaaaaacatcagaaaaaagaggacctgtc
tcagctgaaagacagattaagttggagaagttgaggattccaaaaaaggataactctgcc
attgaggaaaagcctaaatccaagtcagtctcaccatctggaaaatgtatccttgtcaga
cccagaggaatggagtctgaacattcaaagactgctgaactgaataagaaggacccaagg
ctacataagcagatgcatgacaggacagattcaaaagatgatgatgtccgagagaagaaa
agaagtttagagaagaaggagaaggatgaaggtgtcaaaaacttggatcatcagaagtcc
agcagcaccaggggcaagctaataaatggctctctaaacaagcatgaaagacttgagaca
tttctgaaacaagaaattaaagtgaacaaagcaaatgttagaaaaaggtctcggtcaaga
tcacgttcaccaccgttacattctcccaaaagaaaagagaggcgttcatctccaaagaga
aaaaccaggagtattactccaccccccaagtctggaaaggctaggataagtaaacatcaa
cataatgatgatgcttttccacagtcaagtctaagagatgaacgaagcaccaagaaaagc
gccccagaaccaagacgaccaaaaaggccgcttgacgataaacctgctgttcagaaagat
ggactgcagcagagaatttttcctgcagagcataaagacacaaaagatagcaagagatgg
aggagtggatgggaagaaagtaaacatcccaaacagtcagagtcagatctctcacatgga
cgactaggcacccagagacgcaagacttggaacactaatcaaagactgtccacacctcgt
acacctaaacagcatcgcttgagtcttgacagtaacatacaaataccagaagcacttaat
tctgccagtaaacgagatcttttaaggaaggctagcaaaagacatgctgatggtgaaata
tccagtgatgaattcctcaatgtagcccatcaaataaaccaactttttcagtatcaagag
gaaagacagcgatctgactcttgggatgactcgtgtgatgagggagtatatcaatcaaaa
aagaaacaacaaggaatgtctgatgcggagctttcttatcttgagcataaatctaagttg
aaaagaacacagcttcagcgtccagtgcaaaatgatggccagtcgcctttgcatgaaatg
ttctatcagcctcaacatgaaatgacagaacaatacagtgaaagctcagaagtgcataaa
atgtctggtgatgccgtaaagcctgaacatgaagatcctagaagaaccgacaggcctcca
tcatgtacaggttccacattcagaaattcaccaagcccagtcaacttggacggaacttgt
ggaaaatccacagaaccgccatttgaacgctcatcatctccagttgaaatggatcaacaa
tcaggagacatcagcccacgttttgaaagtcccaacagcgtgcactctggcacaggtcca
gatgatggtcctataagtgtagaggttcttccagggcatgatcatttcttggaacaggga
agaagtggacgaaaccatggtgaatctcctgggaatacaccgactcactcctcagaagga
tctatggcacaggtgaacacgccacggcatgatggagcaagtattcctcaaaggtttgat
agatataagagttctcaagctccctttgatgggccatctagccacatgagagagccaagt
ttagatggtcctccaagaccttatgcgcctcctcctcctcggtatgaaggaaatacaggg
ggatttgatgggtctggtggacctgtaaagtatcctggacatcgctttgatgcccctcac
cggtttgaaagatttcccatagcccatgaaagacctgtgagatttaacaacccagcagta
tcacacaggccaatgaggtacacagagcctcatagcgtggtgagatttgaccctcagacc
ccagttcgttatgaccacccaatgcaccaaaacagatttgttaatccaccaaggttcgat
aatcctcacatgcaacatggtccaccaggatacgaggaaccacggttcccgactagacta
atgaattatgatgaacagcagggtacagttagatttgatagtccatcaggtgggatgcgt
tttgagaacccggtgcagcctgaacccttaagatttgatgcaccacctgtcatgccaaga
tatgacccacaaggtcctccaagatactgcggtccaaatattccaaaccagctcagacca
caggagccaaccatgtatgatcaaactcaaggtcaagctcctgtggtaaaccctgttgta
ccaccacctactttcaacattccacccatgaacacgtatggtggcccggcccaacagttt
cccatgcagcaaaatgtttctcaagcatctaacttcagtgtggcagtccctatgtcatcg
gatttccagggttcatttagacctgctccattccctggtccgggtgttggaaatgttcct
cagcctatgatgggacctcaacccttcatgccaccaaaccaaatatctttccagcctggt
tcccagtttcagcagcctgagcccgagccattgaggcaaatagatgtgaacgatctgtta
tcaaaacttatatccactggaataataaaacctgcacaaacggactcaacgactgactcc
acttcagcaggtcagactttatctgtgcctgaagaggaagaggaggaggaacaagaggaa
gatgaagatgtcccagacttgactggctttgttttggaggacatgaaacagagacacgac
agcattatcaccaaactatatactggaatccagtgctattcctgcggcatgcgttttact
gcatctcaaacggatgtgtatgcagatcatttggactggcactacagacagaatcgttca
gagaaggacatcagtaagaaagttacacaccgacggtggtactacagtctgacggattgg
attgaatttgaggaaatcgctgatcttgaggagagggcaaagagtcagttctttgaaaaa
gttcatgaagaggttgtacagaaaactcaggaagcagccaaagagagagagttccagagt
gtaaaggctgctgcagacgtcgttcatgagctgtgtgagatttgccaggagcagtttgag
atgtactgggaggaggaagaggaagagtggcacctgaagaatgccatcagagtcgatgga
aagacatatcatccctcatgctacgaagactacaaaaatacatcctcctttgtggattgc
acaccctcacccaataaaatgcttacagaaaaccctttaacagctttcatgaaacaagag
cagggtgatgaggtgtcatgctccagtattaaagaagagccctccgaggacgtggaggat
atggatgcaccaacggtaaaagaggaggttcaggttaagttagaaggagaatcacaaacc
agtgcaattattttctaa
DBGET
integrated database retrieval system
