Sinocyclocheilus grahami (golden-line barbel): 107552836
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Entry
107552836 CDS
T04918
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
sgh
Sinocyclocheilus grahami (golden-line barbel)
Pathway
sgh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sgh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107552836
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgh03019
]
107552836
Messenger RNA biogenesis [BR:
sgh03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107552836
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
107552836
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF4407
7tm_6
Motif
Other DBs
NCBI-GeneID:
107552836
NCBI-ProteinID:
XP_016090318
UniProt:
A0A672LCD2
LinkDB
All DBs
Position
Unknown
AA seq
893 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVTEGVEQFEDIWKKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVENRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQRE
KEEMEQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKEKQDRIEELKRLIERHRHHI
RMLETILRMLDNDSIQVDAIHKIKDDVEYYIDSSQDPDFEENEFLYDDLDLEEIPTTLMA
TSPQGHIEDEMFLQSSSTPTSTTSSSPIPPSPATGTMEISEDKRGRSTDSEVSQSPVKNG
NPSLSSFSSSASSGSSSSSSSLVSVATVVGGCTAVSGGSSLLGSFSSAVQQHVPQSQQQA
QVKLSSTSAPYNNTPSPPSHPTLPASTSSSLPSSSTPGPVTSNSQSQASSVPGVEGSRLG
LGLVKGGVTVTSSSSVAQMPGLGMAGMSDSLNTMAGLLSGSTPAPYAQAAAGGSAGSTSS
GPVGSGSGSSVISIPSGGAGGANTGVTSNGTGTGVSMGLLGSSPGHGALTGGILNLVPGQ
TTLQGSAQIPVSHVGTAPGGGTGESGLGGNGSSSVAIAGVGTNVVPARPPSSLKQNGATS
YSAVVADNTPDSSLSSASQSQNSHSSSSSSSTNQILDNGPSLLSSITLPPSSPSPAFTDS
TPGGGSLLNGPHSYTLNTEAIKAPEPPSSLKAMAERAALGLTLDGEIPSLHLPDRAPPGP
TTAPQPAVSEVNLPPSLGACPLGPTPLTKEQLYQQAMQESTWTHMPHPSDSERIRQYLMR
NPCPTPPFHHQVPPHHSDSIEFYQRLSTETLFFIFYYLEGTKAQYLSAKALKKQSWRFHT
KYMMWFQRHEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
NT seq
2682 nt
NT seq
+upstream
nt +downstream
nt
atggctgataagagaaaactacaaggtgaaatagatcgatgtttgaaaaaagttactgaa
ggcgtcgaacagtttgaagacatttggaaaaagcttcataatgcagccaatgccaatcag
aaggaaaaatatgaggccgatctcaagaaagagataaaaaagctccagcggctacgagac
cagattaagacatgggtggcatccaatgagatcaaagacaaacggcagctagtggagaac
cggaagcttattgaaacgcaaatggagcgatttaaggtggttgaaagagaaaccaagaca
aaggcctactctaaagaggggctgggcttggctcagaaagttgacccggcgcagagagag
aaggaggaaatggaacagtggctcacgaacacaatagacactttgaacatgcaggtggac
cagtttgagagtgaagttgagtccctctctgttcaaacacggaagaagaaaggagacaaa
gagaagcaggatcggattgaagagctaaagaggttaattgaaagacaccggcaccacatt
cgtatgctagagaccatcttgaggatgttggataatgattcgatccaggttgacgctatc
cataagatcaaagatgatgtggagtattacattgactcttcgcaagacccagactttgaa
gagaacgagttcctctatgatgatctggacttggaggagataccaacaactttgatggca
acgtctcctcagggccatattgaagatgagatgttccttcagtccagcagcacaccgacc
tccaccacttcctcttcccccatccctccatctcctgcaacaggcacaatggagatctcg
gaggataagagaggccgatctacagacagtgaagtcagtcagtctcctgtgaagaatggc
aacccttctctctcgtccttctcttcatccgcctcctcaggctcctcctcctcctcctct
tcgctggtttctgtggctactgttgttggtggctgcacagcggtctctgggggcagcagc
ctactgggaagctttagcagcgcagtgcagcagcatgttcctcagtctcagcagcaagca
caggtcaaactctcctcgacatccgcaccctacaacaacacacctagtccacctagccac
cccacgctacctgcctccacttcttcctctctgcctagttccagcacacctggcccagtt
acttccaattcccagtcccaggcctcatctgttcctggggttgagggctctagactgggt
ttgggccttgtgaaggggggcgtgacagtgaccagcagcagtagtgtggctcagatgcca
ggtctgggcatggcaggcatgtctgattctctcaacaccatggcagggcttctctcaggc
tctactcctgctccctatgcccaggcagctgctggtggatcagcaggtagtacctccagt
ggtccggtggggagcggcagtggtagttctgttatatctataccgagcggaggtgcaggg
ggagcaaacacaggtgtgaccagtaatggcacgggtacaggggttagtatgggcttgcta
gggtccagtccaggtcatggtgctctgaccggagggattctaaacctggtaccggggcag
acgactctccaggggtctgcacagatacctgtgagccatgtgggcacagcacctggagga
ggaactggagagagtgggttgggtggaaatggaagcagttctgtggcaattgcaggagtg
gggacgaacgtagtgcctgcaagaccccctagcagcctcaaacaaaatggagcaaccagt
tacagtgctgtggttgcggacaacacaccagactcctcacttagcagtgccagccaatca
caaaacagccattcctcatcctcgagctcatcaacgaatcaaattctggataatggcccc
agtttattgagttctatcactctacccccctcctccccgtcacctgccttcactgacagc
acacctggtggtgggagtctgctaaacggcccacactcctacacactcaacacagaagcc
atcaaggctcctgaaccaccaagctctctgaaagctatggcagaacgggctgcactggga
ttgacactggatggagagattccatcactacacctcccagatcgagccccacctggaccc
acaacggcccctcagcctgccgtttcagaggtcaacctgccgccatctttaggggcatgt
ccgctaggtcccacccccctcactaaagagcagctttaccaacaggcaatgcaggagtca
acatggacacacatgccccacccgtccgattcagagagaatcaggcagtacctgatgaga
aacccctgtcctacaccgccattccaccaccaggttcccccacatcattcggactctatt
gagttctaccagagattgtccactgaaacgctcttcttcattttctactacctggagggc
acaaaggcacagtacttgtcggctaaagcactgaagaagcaatcgtggaggttccacacc
aaatacatgatgtggttccaacggcacgaggaacccaagaccatcactgatgaatttgaa
cagggcacgtacatttactttgactatgaaaagtggggccagagaaaaaaggaaggattt
acctttgagtacagatacctggaggacagagacctgcagtga
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