Sinocyclocheilus grahami (golden-line barbel): 107556248
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Entry
107556248 CDS
T04918
Name
(RefSeq) LOW QUALITY PROTEIN: Bloom syndrome protein homolog
KO
K10901
bloom syndrome protein [EC:
5.6.2.4
]
Organism
sgh
Sinocyclocheilus grahami (golden-line barbel)
Pathway
sgh03440
Homologous recombination
sgh03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
sgh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
107556248
03460 Fanconi anemia pathway
107556248
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sgh03032
]
107556248
03400 DNA repair and recombination proteins [BR:
sgh03400
]
107556248
Enzymes [BR:
sgh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
107556248
DNA replication proteins [BR:
sgh03032
]
Eukaryotic type
DNA Replication Termination Factors
Other termination factors
107556248
DNA repair and recombination proteins [BR:
sgh03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecQ family DNA helicases
107556248
Bloom's syndrome complex (BTR)
107556248
FA (Fanconi anemia) pathway
107556248
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
BLM_N
BDHCT
RecQ_Zn_bind
Helicase_C
RQC
HRDC
Motif
Other DBs
NCBI-GeneID:
107556248
NCBI-ProteinID:
XP_016094801
LinkDB
All DBs
Position
Unknown
AA seq
1397 aa
AA seq
DB search
MPSLPQNNLKEQLERHNNAAQSKLSLLKLKPGGFCFKKKSSSGISKVEVPLKVTGANVLA
NRSVNISRSCEVTKTHVTFSQNPKRATPKVNFFTAPSRPKTNTVNPLVNPFAVNKTPPVQ
FTIKDLPKSAAFPKDQTVCEPKCDISQLSFNEWDDLDDFETPVKARVPSPVTETSTKKLS
VSDQNMSPNSSCAKSDDTTLNGGSQVTESITIPKDVLSAANRVSTEPAEREPEDSPIKKS
KRHKKSVQQKALLSDTEDEESLTVLHQIKMKRTSTAAEEQCADTNIIDIDETETDNFYED
FIPPSPVLEETSAFDSEEEKSSSDPVTHADKNVPPHESASNLSAPFDEPAKELKGPDDAL
FTIMESICYLVDTIPEHELIALTCGTELLLQRAHRKRILANGAPSRTSQLGPAATPYSSL
LNRQGFGVTPSSPTSSMTPVISEKAVKTGFPFRKSIASVISLENDSVFEDSDCIINGVET
PGGSWNPNSTSKTATSRDISNRSSPPSSKYVSKTDKCYSGLSFNESNNQTVGGDQVDLFY
SPKRVDSGKRNTESSVETNMEVPNCSRADTEPLDDFLIDDFDIDDFDETDVPEYFEEPPS
VLASRDRFDAKTPSVREGGPSKPLERKTVTPPALKPTKTFSTEPVYRNPAHDRFRGISFP
HSPEMMKIFHKKFGLHQFRFNQLEAINASLLGEDTFVLMPTGGGKSLCYQLPACVFAGVT
VVISPLRSLIVDQVQKLTTLDICATSLSGDKKDSEAAKVYMQLSRKDPPIKLLYATPEKV
CASGRMISALQNLYERGLLARFVIDEAHCVSQWGHDFRPDYKRLHELRRMFPNVPIMALT
ATATPRVQKDILNQLAMTRPQVFTMSFNRHNLKYSVLPKKPKKVDEECIQWIKKYYPRDS
GIVYCLSRNDCDTLADSLQRAGIAALAYHAGLSDREYVQNKWINQDGCQVMCATIAFGMG
IDKPDVRYVIHASLPKSVEGYYQESGRAGRDGEISHCVLFYSYSDVIRIKRLIAMDKDGS
QQSKATHINNLHSMVHFCENVAECRRIQLLAYFGEHTFNTSFCKEHPEVICDNCARPHKY
KSRNVTDDVKKIVRFVQENCEKVGNRYGKSAQQNRLTLNMLVDIFLGSKSARIQSGMFGV
GAAYSKHNAERLFKKLVLDSVLMEDLYITNKGQAVAYISAGLKAMSVLSGCMQVEFVETE
TASSIRKHKASVIENISKREEMVKKCLQELNDLCKKLGKVFGIHYYNIFSTATLKKIAGS
RTSSAAEAQTESSGWIDTTRGHQNEEDDDDEGDTTSTYFRSTSGRGAKRKQGSYSRKPKR
RKGASGQNSASKGGYSNNWSSSRGGGGRGGYRGGNRSAGRGSRPAPSVPAVKRPGFMALP
TPQNAARPFLKPTFSHL
NT seq
4194 nt
NT seq
+upstream
nt +downstream
nt
atgccgagtcttcctcaaaacaacctaaaggagcaactggaacgacacaataatgctgca
cagagcaagttatcactgctgaaactaaagcctggggggttttgtttcaaaaagaagtct
tcatcaggtatctccaaagtggaagttcctctaaaggtaactggtgcaaatgtcttagca
aacaggagtgtcaatatttcacgcagctgtgaagtaaccaaaactcatgtgacgttttcg
caaaaccctaagagagcaactccgaaagtcaacttcttcactgcacccagcagaccgaag
acaaatactgttaatccattagtcaacccgtttgctgtgaacaaaacacctcctgtccaa
tttaccattaaggatttgccaaaatctgcagccttccctaaggatcaaactgtgtgtgaa
cctaagtgtgacatctcccaactctccttcaatgaatgggatgacttggatgattttgaa
accccagtcaaggcaagagtaccgtccccagttacagaaacctctacaaaaaagctaagt
gtatcggaccagaacatgtccccaaattcctcttgtgctaagagtgatgatactacatta
aatggaggttcacaggttacagaatctataactatcccaaaggatgtcctgtcagctgct
aatagagtcagcacagagcctgctgagagagagccagaggactcgcccattaaaaaatcc
aaaagacataagaaatcagtccagcaaaaggcgttactgagtgacactgaagatgaggag
tcattgactgtattacaccagataaaaatgaaaaggacatcaactgcggcagaagagcag
tgtgctgacacaaacatcatagacattgatgagactgagacagacaacttttatgaggat
ttcatccccccatcccctgttcttgaggagacgagtgcctttgactccgaagaggagaaa
agttcatctgaccctgttacacatgctgacaaaaatgttccacctcatgagtctgcctca
aacctgtcagcaccctttgatgaacctgctaaagaattaaaaggacctgatgatgctctc
tttactattatggagtctatttgttatctagttgacactattccagagcatgagctcata
gcactgacctgtggcacagagctattactgcagagagcacacaggaaaaggattcttgct
aatggtgcaccatctagaacatctcagttaggcccagcagcaactccatattctagtctg
ctaaacagacaagggtttggagtcacgccctctagtccaacatcatctatgaccccagtg
atatcagaaaaggccgtcaaaacaggctttccatttcgcaaatccattgcctcagtcata
tctttggaaaatgacagtgtgtttgaggattctgactgtatcatcaatggggttgagacc
cccggtggttcctggaatcctaacagcacctcaaaaacagcaactagtagggacatctca
aacaggtcaagtcccccttcaagcaaatatgtgtcaaaaacagataagtgctactcaggg
ttgtccttcaatgagtcaaacaatcagactgtgggtggagatcaggttgacttgttttat
tcccccaaaagagtagattcaggaaagagaaatactgagagcagtgttgaaaccaacatg
gaagtacccaactgttctcgagcagatacagagccacttgatgacttcctaattgatgat
tttgatattgatgattttgatgagactgatgttccagaatattttgaagaacctccaagt
gtcttggcatcaagagaccgctttgatgcaaaaacgccatcagtgcgggagggagggcct
tcaaaacctttggagagaaagactgtaacaccaccagctctaaaacctaccaaaacattc
agcactgaacctgtgtacagaaacccagctcatgaccgctttagaggcatcagctttcct
cacagcccagagatgatgaagatcttccataagaagtttgggctgcatcagttccgcttc
aatcagctggaggctattaatgcctcactgttaggagaagacacgtttgtactgatgcct
acaggtggtggtaaaagtctctgctatcagcttcctgcttgtgtctttgctggagtgact
gttgtcatttctcctctgcggtctctcatagttgaccaggttcaaaagcttaccacatta
gatatctgtgcaactagtttatctggggacaaaaaagatagtgaggctgcaaaggtctat
atgcagctgtctaggaaggatccccccatcaaactgctttatgccactcctgagaaggtg
tgtgcaagtggacggatgatcagtgcccttcagaatctgtatgaaaggggtctgctagct
cgctttgtcattgacgaggcccattgcgtcagtcagtggggtcatgacttcaggccagac
tacaagcgcttgcatgagctcaggcggatgtttcccaatgttcctataatggcactgacg
gccacagccactcctagagttcagaaagacattctgaaccagctggcaatgacccgtcct
caggtattcactatgagcttcaacaggcacaatctcaaatattcagttttgccaaaaaag
cccaagaaggtcgatgaggaatgtattcagtggatcaagaaatattacccacgtgactct
gggattgtgtactgcttgtctcgtaatgactgcgacactctggctgacagtctgcagagg
gctgggatcgcagcgctggcttatcacgctggcctgagtgacagggaatatgtccagaat
aaatggatcaaccaggatggctgccaggttatgtgtgccaccattgcatttggcatggga
atcgataagccagatgtgcgttatgtgatccatgccagtttgcccaagtcagtggagggt
tattaccaggagtcaggcagagctggtcgagatggagagatttcccactgcgtcctcttc
tattcctacagtgatgttatccgcatcaagagactcattgctatggataaagacggcagc
cagcaatccaaagccacccacatcaacaacctgcacagcatggtgcatttctgtgagaat
gtggccgagtgcaggagaatccagttgctggcttacttcggcgagcacacattcaataca
agcttctgtaaagagcatcctgaggtcatctgtgacaattgtgccagaccacataaatat
aaatcaagaaatgtcacagatgatgtgaagaagattgtgaggtttgtgcaggagaactgt
gagaaggttggaaaccgatatggcaaatccgcccagcagaacaggctcactctcaacatg
ttggtcgacatatttctgggctccaaaagtgctcggatccagtctggaatgttcggagta
ggagcagcatattccaaacacaatgctgagaggctttttaagaaactggtgctggatagt
gttctgatggaggacctctacatcactaacaaagggcaggcagtggcctatatctctgct
gggcttaaagccatgagtgtactgagtggttgcatgcaggttgagtttgttgagacggag
actgcgtccagcatcagaaagcacaaagcctctgtgattgagaacatttctaagagagag
gagatggttaaaaaatgtctacaggaactcaatgatctgtgcaagaagttgggcaaagtc
tttggcattcattactacaacattttctccacagccacactcaaaaagattgctggttct
cgcacttcctctgcagctgaggcacagacagagagttcaggatggattgacacaacaaga
ggccatcaaaacgaggaagatgacgatgatgaaggggacaccacatcaacctatttcaga
agcacctctggacgaggagcaaagagaaagcaagggtcttactccaggaaacccaaaaga
agaaaaggtgccagcggccaaaactctgcctctaaaggtggatacagcaataactggtct
tcatcaagaggaggcggaggaagagggggatacaggggtggtaatcgaagtgcaggcaga
ggttccaggccggctccatcagtcccagcagtgaagaggcccggcttcatggctttgccc
actccacagaatgctgctcgtccattcctcaaaccaacattctctcacctctag
DBGET
integrated database retrieval system
